ggKbase home page

SCNpilot_cont_750_p_scaffold_850

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_850_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..778)
DNA (777bp) protein (259aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B403_9RHIZ
glucose-6-phosphate 1-dehydrogenase
SCNpilot_cont_750_p_scaffold_850_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(789..1793)
DNA (1005bp) protein (335aa)
6-phosphogluconate dehydrogenase n=1 Tax=Methyloferula stellata RepID=UPI000370ADC4
6-phosphogluconate dehydrogenase-like protein rbh
6-phosphogluconate dehydrogenase-like protein {ECO:0000313|EMBL:AGK56923.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_750_p_scaffold_850_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1973..2683)
DNA (711bp) protein (237aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WWY5_OCHA4
phosphate uptake regulator PhoU; K02039 phosphate transport system protein
PhoU family transcriptional regulator {ECO:0000313|EMBL:EXL07687.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_cont_750_p_scaffold_850_4
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2763..3920)
DNA (1158bp) protein (386aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
ATPase domain-containing protein; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Phosphate regulon, two-component sensor histidine kinase, phoR n=1 Tax=Nitratireductor indicus C115 RepID=K2NZ12_9RHIZ
SCNpilot_cont_750_p_scaffold_850_5
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4007..4915
DNA (909bp) protein (303aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y3M8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX17158.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
polyphosphate kinase 2, PA0141 family
SCNpilot_cont_750_p_scaffold_850_6
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4878..6902)
DNA (2025bp) protein (675aa)
Glycosyl transferase family protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C449_9RHIZ
Glycosyl transferase family protein {ECO:0000313|EMBL:EIM76601.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
glycosyl transferase family protein
SCNpilot_cont_750_p_scaffold_850_7
unknown

Not on your lists

comp(6899..7099)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_850_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7135..8019
DNA (885bp) protein (295aa)
Family 3 extracellular solute-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3S9_9RHIZ
Family 3 extracellular solute-binding protein {ECO:0000313|EMBL:EHK52344.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
family 3 extracellular solute-binding protein
SCNpilot_cont_750_p_scaffold_850_9
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7958..8836)
DNA (879bp) protein (293aa)
Sterol desaturase-like protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N7W7_9RHIZ
Sterol desaturase-like protein {ECO:0000313|EMBL:EKF20143.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Sterol desaturase
SCNpilot_cont_750_p_scaffold_850_10
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8855..9268)
DNA (414bp) protein (138aa)
Mlr5635 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98BC7_RHILO
hypothetical protein
Mlr5635 protein {ECO:0000313|EMBL:BAB52045.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_750_p_scaffold_850_11
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9410..11077
DNA (1668bp) protein (556aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
lysK; lysyl-tRNA synthetase; K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6] rbh
UPI0003CEEAE2 related cluster n=1 Tax=unknown RepID=UPI0003CEEAE2
SCNpilot_cont_750_p_scaffold_850_12
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11143..11628)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F3Y9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGQ19827.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_850_13
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11865..13064
DNA (1200bp) protein (400aa)
ATPase-like, ParA/MinD n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3N5_9RHIZ
ATPase-like, ParA/MinD {ECO:0000313|EMBL:EHK52412.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ATP/GTP-binding-like protein; K03593 ATP-binding protein involved in chromosome partitioning
SCNpilot_cont_750_p_scaffold_850_14
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13159..13950
DNA (792bp) protein (264aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EKF44214.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EKF44214.1};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
paaG; phenylacetate degradation enoyl-CoA hydratase PaaG; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
Enoyl-CoA hydratase n=1 Tax=Nitratireductor indicus C115 RepID=K2P283_9RHIZ
SCNpilot_cont_750_p_scaffold_850_15
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14001..14597)
DNA (597bp) protein (199aa)
biphenyl-2,3-diol 1,2-dioxygenase III (EC:1.13.11.39)
Biphenyl-2,3-diol 1,2-dioxygenase III n=1 Tax=Bacillus megaterium (strain ATCC 12872 / QMB1551) RepID=D5E3I3_BACMQ
Uncharacterized protein {ECO:0000313|EMBL:KGB83309.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
SCNpilot_cont_750_p_scaffold_850_16
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14627..15079)
DNA (453bp) protein (151aa)
Carbon monoxide dehydrogenase subunit G n=1 Tax=Nitratireductor indicus C115 RepID=K2PSY8_9RHIZ
Carbon monoxide dehydrogenase subunit G {ECO:0000313|EMBL:KFB11252.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
carbon monoxide dehydrogenase subunit G
SCNpilot_cont_750_p_scaffold_850_17
unknown

Not on your lists

comp(15178..15897)
DNA (720bp) protein (240aa)
Methyltransferase type 11 n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B8Y5_PARDP
Methyltransferase family protein {ECO:0000313|EMBL:CPR17794.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
methyltransferase type 11
SCNpilot_cont_750_p_scaffold_850_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15987..17582)
DNA (1596bp) protein (532aa)
trimethylamine methyltransferase MttB; K14083 trimethylamine methyltransferase [EC:2.1.1.-]
Trimethylamine methyltransferase MttB n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3P2_9RHIZ
Trimethylamine methyltransferase MttB {ECO:0000313|EMBL:EHK52419.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_cont_750_p_scaffold_850_19
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17741..19234)
DNA (1494bp) protein (498aa)
GntR family transcription regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3P3_9RHIZ
GntR family transcription regulator {ECO:0000313|EMBL:EHK52420.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
GntR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase
SCNpilot_cont_750_p_scaffold_850_20
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19520..21094
DNA (1575bp) protein (525aa)
pgi; glucose-6-phosphate isomerase; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9]
Glucose-6-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=GPI {ECO:0000255|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000255|HAMAP-Rule:MF_00473};; Phosphoglucose isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=PGI {ECO:0000255|HAMAP-Rule:MF_00473};; Phosphohexose isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=PHI {ECO:0000255|HAMAP-Rule:MF_00473};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp
Glucose-6-phosphate isomerase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=G6PI_MESSB
SCNpilot_cont_750_p_scaffold_850_21
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21100..21807
DNA (708bp) protein (236aa)
HAD-superfamily hydrolase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I454_9RHIZ
HAD-superfamily hydrolase {ECO:0000313|EMBL:EHK52240.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
haloacid dehalogenase superfamily enzyme, subfamily IA
SCNpilot_cont_750_p_scaffold_850_22
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21811..22362)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PSY5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF44207.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_850_23
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22518..24110
DNA (1593bp) protein (531aa)
Dipeptide-binding ABC transporter, periplasmic substrate-binding component n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RLN1_9RHIZ
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJY47962.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
peptide ABC transporter substrate-binding protein; K12368 dipeptide transport system substrate-binding protein rbh
SCNpilot_cont_750_p_scaffold_850_24
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24204..25214
DNA (1011bp) protein (337aa)
peptide ABC transporter permease n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A19683
Dipeptide transport system permease protein dppB {ECO:0000313|EMBL:EEQ96300.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
alkaline phosphatase; K12369 dipeptide transport system permease protein
SCNpilot_cont_750_p_scaffold_850_25
uncultured Desulfofustis sp. PB-SRB1, Desulfofustis, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25219..26133
DNA (915bp) protein (305aa)
Peptide ABC transporter n=1 Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4JDJ7_9DELT
Peptide ABC transporter {ECO:0000313|EMBL:ESQ12589.1}; TaxID=1385624 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfofustis; environmental samples.;" source="uncultured Desulfofustis sp. PB-SRB1.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component rbh
SCNpilot_cont_750_p_scaffold_850_26
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26138..27136
DNA (999bp) protein (333aa)
Dipeptide transport ATP-binding protein DppD n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QWM4_9RHIZ
Dipeptide transport ATP-binding protein DppD {ECO:0000313|EMBL:ESR24152.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
dppDch1; dipeptide ABC transporter; K12371 dipeptide transport system ATP-binding protein
SCNpilot_cont_750_p_scaffold_850_27
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27133..28158
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00037338C4
Dipeptide transport ATP-binding protein DppF {ECO:0000313|EMBL:ESR24151.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
dppE; dipeptide ABC transporter, ATP-binding component rbh
SCNpilot_cont_750_p_scaffold_850_28
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28247..28762
DNA (516bp) protein (172aa)
Ferritin n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BFV5_9RHIZ
DNA-binding protein {ECO:0000313|EMBL:KGD86523.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
ferritin
SCNpilot_cont_750_p_scaffold_850_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29074..30672)
DNA (1599bp) protein (533aa)
ATP-dependent DNA ligase {ECO:0000313|EMBL:EHK52384.1}; EC=6.5.1.1 {ECO:0000313|EMBL:EHK52384.1};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ATP dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3Q7_9RHIZ
SCNpilot_cont_750_p_scaffold_850_30
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30672..31682)
DNA (1011bp) protein (337aa)
UPI0003CFDC7F related cluster n=1 Tax=unknown RepID=UPI0003CFDC7F
Uncharacterized protein {ECO:0000313|EMBL:CDX26158.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein; K07577 putative mRNA 3-end processing factor
Displaying items 1-30 of 36 in total

View Taxonomy