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SCNpilot_cont_750_p_scaffold_5454

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_5454_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..1102)
DNA (1101bp) protein (367aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Lysine--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=M4NM42_9GAMM
lysyl-tRNA synthetase (class II)
SCNpilot_cont_750_p_scaffold_5454_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1447..1773)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDF9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88800.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_p_scaffold_5454_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1814..2917)
DNA (1104bp) protein (368aa)
Peptide chain release factor 2 n=1 Tax=Rhodanobacter denitrificans RepID=M4NDJ7_9GAMM
bacterial peptide chain release factor 2 (bRF-2) rbh
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_p_scaffold_5454_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3046..4518
DNA (1473bp) protein (491aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036C1D42
Copper oxidase {ECO:0000313|EMBL:AHX12676.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
multicopper oxidase, type 2
SCNpilot_cont_750_p_scaffold_5454_5
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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4515..5714
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D83F6C
chromate transporter; K07240 chromate transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_cont_750_p_scaffold_5454_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5719..6264)
DNA (546bp) protein (182aa)
asparagine synthase, glutamine-hydrolyzing (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL2_9GAMM
Asparagine synthetase B {ECO:0000313|EMBL:EIL99303.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_cont_750_p_scaffold_5454_7
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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6332..7330
DNA (999bp) protein (333aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ71109.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_cont_750_p_scaffold_5454_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7764..8129)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91623.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF3478)
SCNpilot_cont_750_p_scaffold_5454_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8210..9916)
DNA (1707bp) protein (569aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] rbh
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL4_9GAMM
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EIL99305.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_cont_750_p_scaffold_5454_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9919..10839)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99306.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_5454_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10844..12772)
DNA (1929bp) protein (643aa)
ABC transporter ATPase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL6_9GAMM
ABC transporter ATPase {ECO:0000313|EMBL:EIL99307.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3 rbh
SCNpilot_cont_750_p_scaffold_5454_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12952..13317
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99308.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_5454_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13412..14461
DNA (1050bp) protein (350aa)
Peptidylarginine deiminase-like protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8Y4_9GAMM
Peptidylarginine deiminase-like protein {ECO:0000313|EMBL:EIL95925.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
peptidylarginine deiminase-like enzyme rbh
SCNpilot_cont_750_p_scaffold_5454_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14564..14845
DNA (282bp) protein (94aa)
Putative amidohydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN8_9GAMM
Putative amidohydrolase {ECO:0000313|EMBL:EIL91629.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative amidohydrolase
Displaying 14 items

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