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SCNpilot_cont_750_p_scaffold_1656

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Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_1656_1
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1285)
DNA (1284bp) protein (428aa)
integrase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4AB11
Integrase {ECO:0000313|EMBL:EQB16282.1}; Flags: Fragment;; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
putative integrase
SCNpilot_cont_750_p_scaffold_1656_trna_1
unknown

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comp(1451..1521)
DNA (71bp)
transferRNA
SCNpilot_cont_750_p_scaffold_1656_2
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1615..2151)
DNA (537bp) protein (179aa)
adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Adenine phosphoribosyltransferase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFN5_9SPHN
SCNpilot_cont_750_p_scaffold_1656_3
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2263..3099)
DNA (837bp) protein (279aa)
Cytochrome C n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H7V8_9SPHN
Cytochrome C {ECO:0000313|EMBL:EQB08188.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
cytochrome c1; K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit
SCNpilot_cont_750_p_scaffold_1656_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3123..4409)
DNA (1287bp) protein (429aa)
Cytochrome b n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAJ9_NOVAD
cytochrome b/b6-like; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit rbh
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_750_p_scaffold_1656_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4420..4983)
DNA (564bp) protein (188aa)
ubiquinol-cytochrome c reductase, iron-sulfur subunit (EC:1.10.2.2); K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] rbh
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAJ8_NOVAD
SCNpilot_cont_750_p_scaffold_1656_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5202..5957)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000370FE6F
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein; K05810 conserved hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_1656_7
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5950..8565)
DNA (2616bp) protein (872aa)
aminopeptidase (EC:3.4.11.2); K01256 aminopeptidase N [EC:3.4.11.2] rbh
Aminopeptidase N n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C5N0_9SPHN
Aminopeptidase N {ECO:0000313|EMBL:EIZ79142.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_cont_750_p_scaffold_1656_8
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8628..9419
DNA (792bp) protein (264aa)
Epimerase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H7V2_9SPHN
Epimerase {ECO:0000313|EMBL:EQB08183.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
NAD-dependent epimerase/dehydratase rbh
SCNpilot_cont_750_p_scaffold_1656_9
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9691..10638)
DNA (948bp) protein (316aa)
L-threonine aldolase (EC:4.1.2.5); K01620 threonine aldolase [EC:4.1.2.5] rbh
Amino acid lyase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0GW22_9SPHN
Amino acid lyase {ECO:0000313|EMBL:EQB08181.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_cont_750_p_scaffold_1656_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10812..11810
DNA (999bp) protein (333aa)
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:GAO54931.1}; EC=4.2.1.46 {ECO:0000313|EMBL:GAO54931.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
NAD-dependent epimerase/dehydratase; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6] rbh
NAD-dependent epimerase/dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I7_NOVAD
SCNpilot_cont_750_p_scaffold_1656_11
unknown

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comp(12716..12877)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_1656_12
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13411..14016)
DNA (606bp) protein (202aa)
Cytochrome C n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I1S1_9SPHN
Cytochrome C {ECO:0000313|EMBL:EQB18273.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
cytochrome c; K08738 cytochrome c
SCNpilot_cont_750_p_scaffold_1656_13
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14236..15132
DNA (897bp) protein (299aa)
Prephenate dehydratase {ECO:0000313|EMBL:EJU09623.1}; EC=4.2.1.51 {ECO:0000313|EMBL:EJU09623.1};; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
prephenate dehydratase (EC:4.2.1.51); K04518 prephenate dehydratase [EC:4.2.1.51] rbh
Prephenate dehydratase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VNL0_9SPHN
SCNpilot_cont_750_p_scaffold_1656_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15206..15829
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLF7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49232.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_1656_15
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15826..17040
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WFX7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ79108.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_1656_16
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17037..17990
DNA (954bp) protein (318aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
ATPase AAA_3 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IH91_9SPHN
ATPase AAA_3 {ECO:0000313|EMBL:CCA91342.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_750_p_scaffold_1656_17
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18037..19338
DNA (1302bp) protein (434aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IH92_9SPHN
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCA91343.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_750_p_scaffold_1656_18
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19335..20381
DNA (1047bp) protein (349aa)
membrane protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B53E3A
Scaffold4, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32854.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_1656_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20378..21268
DNA (891bp) protein (297aa)
RDD protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB64_NOVAD
hypothetical protein rbh
RDD protein {ECO:0000313|EMBL:ABD24909.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_750_p_scaffold_1656_20
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21265..21720
DNA (456bp) protein (152aa)
N-acetyltransferase GCN5; K03829 putative acetyltransferase [EC:2.3.1.-]
GCN5-related N-acetyltransferase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EB46_9SPHN
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EHJ61513.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_cont_750_p_scaffold_1656_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21786..22910
DNA (1125bp) protein (375aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] rbh
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBA8_NOVAD
Displaying 22 items

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