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SCNpilot_cont_750_p_scaffold_1233

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_1233_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..80
DNA (78bp) protein (26aa)
Galactonate dehydratase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JB22_AGRRK
galactonate dehydratase protein
Putative epimerase {ECO:0000313|EMBL:ENN87559.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_750_p_scaffold_1233_2
unknown

Not on your lists

432..554
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_1233_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(494..1210)
DNA (717bp) protein (239aa)
Integral membrane protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR12_RHITR
integral membrane protein rbh
Integral membrane protein {ECO:0000313|EMBL:AGB72564.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1232..2002)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR24_RHITR
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGB72565.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1989..2528)
DNA (540bp) protein (180aa)
RNA polymerase sigma factor n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPE0_RHITR
RNA polymerase sigma factor rbh
RNA polymerase sigma factor {ECO:0000313|EMBL:AGB72566.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2592..3515)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UBP3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87563.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_1233_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3647..4399)
DNA (753bp) protein (251aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMG8_RHITR
msrA2; peptide-methionine sulfoxide reductase A rbh
SCNpilot_cont_750_p_scaffold_1233_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4522..4731)
DNA (210bp) protein (70aa)
Protein SlyX homolog n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR30_RHITR
SlyX superfamily
Protein SlyX homolog {ECO:0000256|HAMAP-Rule:MF_00715}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_9
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4967..5803
DNA (837bp) protein (279aa)
Putative metallophosphoesterase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V3B5_9RHIZ
Putative metallophosphoesterase protein {ECO:0000313|EMBL:ENN87566.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
putative metallophosphoesterase rbh
SCNpilot_cont_750_p_scaffold_1233_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5800..6963
DNA (1164bp) protein (388aa)
Putative sugar ABC transporter, ATP-binding protein n=1 Tax=Rhizobium tropici CIAT 899 PF3_RHITR">RepID=L0LPF3_RHITR
putative sugar ABC transporter, ATP-binding protein rbh
Putative sugar ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGB72571.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6956..7879
DNA (924bp) protein (308aa)
Putative sugar ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMX0_RHITR
putative sugar ABC transporter, permease protein rbh
Putative sugar ABC transporter, permease protein {ECO:0000313|EMBL:AGB72572.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7876..8712
DNA (837bp) protein (279aa)
Putative sugar ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMH8_RHITR
putative sugar ABC transporter, permease protein rbh
Putative sugar ABC transporter, permease protein {ECO:0000313|EMBL:AGB72573.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8852..10117
DNA (1266bp) protein (422aa)
Putative sugar ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR34_RHITR
putative sugar ABC transporter, substrate-binding protein rbh
Putative sugar ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGB72574.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10189..11169)
DNA (981bp) protein (327aa)
Alanine racemase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR58_RHITR
alanine racemase rbh
Alanine racemase {ECO:0000313|EMBL:AGB72575.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11418..12338
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V9B7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87572.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
3-hydroxyacyl-CoA dehydrogenase rbh
SCNpilot_cont_750_p_scaffold_1233_16
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12373..12828)
DNA (456bp) protein (152aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2DD41_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJK80647.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
transcriptional regulator protein
SCNpilot_cont_750_p_scaffold_1233_17
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12903..14063
DNA (1161bp) protein (387aa)
Salicylate hydroxylase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JB38_AGRRK
nah; salicylate hydroxylase rbh
Salicylate hydroxylase {ECO:0000313|EMBL:KEA04296.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_cont_750_p_scaffold_1233_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14238..15824)
DNA (1587bp) protein (529aa)
NADP-dependent fatty aldehyde dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMX5_RHITR
NADP-dependent fatty aldehyde dehydrogenase rbh
NADP-dependent fatty aldehyde dehydrogenase {ECO:0000313|EMBL:AGB72577.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_19
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16050..17555
DNA (1506bp) protein (502aa)
Putative transmembrane cyclic nucleotide-binding protein ion channel n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U4Q5_9RHIZ
Putative transmembrane cyclic nucleotide-binding protein ion channel {ECO:0000313|EMBL:ENN87574.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
small-conductance mechanosensitive channel rbh
SCNpilot_cont_750_p_scaffold_1233_20
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17596..18213)
DNA (618bp) protein (206aa)
NAD(P)H dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR37_RHITR
NAD(P)H dehydrogenase rbh
NAD(P)H dehydrogenase {ECO:0000313|EMBL:AGB72579.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_21
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18293..18898
DNA (606bp) protein (202aa)
Transcriptional regulator TetR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR64_RHITR
transcriptional regulator TetR family rbh
Transcriptional regulator TetR family {ECO:0000313|EMBL:AGB72580.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_22
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18954..20486)
DNA (1533bp) protein (511aa)
Peptidase S10 serine carboxypeptidase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPG4_RHITR
peptidase S10 serine carboxypeptidase rbh
Peptidase S10 serine carboxypeptidase {ECO:0000313|EMBL:AGB72581.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_23
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20696..21427
DNA (732bp) protein (244aa)
dienelactone hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45] rbh
Dienelactone hydrolase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V3C2_9RHIZ
Dienelactone hydrolase protein {ECO:0000313|EMBL:ENN87576.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_750_p_scaffold_1233_24
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21484..22188)
DNA (705bp) protein (235aa)
Isochorismate family protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMX8_RHITR
isochorismate family protein rbh
Isochorismate family protein {ECO:0000313|EMBL:AGB72582.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_25
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22317..22796)
DNA (480bp) protein (160aa)
Putative MarR family transcriptional regulator n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMI7_RHITR
putative MarR family transcriptional regulator
Putative MarR family transcriptional regulator {ECO:0000313|EMBL:AGB72583.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_26
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22873..23736
DNA (864bp) protein (288aa)
Haloalkane dehalogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR40_RHITR
haloalkane dehalogenase rbh
Haloalkane dehalogenase {ECO:0000313|EMBL:AGB72584.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_27
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23882..24772
DNA (891bp) protein (297aa)
Extracellular solute-binding protein family 3 n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR66_RHITR
extracellular solute-binding protein family 3 rbh
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:AGB72585.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_28
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24973..27534
DNA (2562bp) protein (854aa)
Dimethylglycine dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPG8_RHITR
dimethylglycine dehydrogenase rbh
Dimethylglycine dehydrogenase {ECO:0000313|EMBL:AGB72586.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_p_scaffold_1233_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27664..28854)
DNA (1191bp) protein (397aa)
Putative membrane protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V158_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:ENN87580.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein; K07148 uncharacterized protein rbh
SCNpilot_cont_750_p_scaffold_1233_30
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28847..29425)
DNA (579bp) protein (193aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V3C7_9RHIZ
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ENN87581.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
TetR family transcriptional regulator
Displaying 30 items

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