ggKbase home page

SCNpilot_cont_750_p_scaffold_2524

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_2524_1
unknown

Not on your lists

comp(2..136)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2524_2

Not on your lists

comp(133..834)
DNA (702bp) protein (234aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=mine drainage metagenome RepID=E6PXN7_9ZZZZ
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:CBH99696.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
UBA/THIF-type NAD/FAD binding protein
SCNpilot_cont_750_p_scaffold_2524_3
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

875..2095
DNA (1221bp) protein (407aa)
Site-specific recombinase XerD n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QKU2_AZOSU
site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:AEV25547.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_cont_750_p_scaffold_2524_4
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2095..3735
DNA (1641bp) protein (547aa)
hypothetical protein n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI0003722EBA
phage integrase family protein
Uncharacterized protein {ECO:0000313|EMBL:AEI82619.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
SCNpilot_cont_750_p_scaffold_2524_5
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3732..5573
DNA (1842bp) protein (614aa)
Uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EKZ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ57963.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
integrase family protein
SCNpilot_cont_750_p_scaffold_2524_6
unknown

Not on your lists

5570..6100
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2524_7
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(6295..6711)
DNA (417bp) protein (139aa)
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V1X6_TERSS
protein-tyrosine phosphatase
Protein-tyrosine phosphatase, low molecular weight {ECO:0000313|EMBL:ADV83464.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
SCNpilot_cont_750_p_scaffold_2524_8

Not on your lists

comp(6800..7291)
DNA (492bp) protein (164aa)
Arsenate reductase {ECO:0000313|EMBL:CBI06914.1}; EC=1.20.4.1 {ECO:0000313|EMBL:CBI06914.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
arsC; arsenate reductase (EC:1.20.4.1); K03741 arsenate reductase [EC:1.20.4.1]
ArsR family transcriptional regulator n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5020D
SCNpilot_cont_750_p_scaffold_2524_9

Not on your lists

comp(7327..8262)
DNA (936bp) protein (312aa)
Putative ARSENITE METHYLTRANSFERASE SAM-dependent methyltransferase UbiE/COQ5 family protein {ECO:0000313|EMBL:CBI06913.1}; EC=2.1.1.137 {ECO:0000313|EMBL:CBI06913.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative ARSENITE METHYLTRANSFERASE SAM-dependent methyltransferase UbiE/COQ5 family protein n=1 Tax=mine drainage metagenome RepID=E6QI48_9ZZZZ
methylase involved in ubiquinone/menaquinone biosynthesis
SCNpilot_cont_750_p_scaffold_2524_10
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

8339..8758
DNA (420bp) protein (140aa)
ArsR family transcriptional regulator n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B71F25
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:AEU39026.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
SCNpilot_cont_750_p_scaffold_2524_11
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

8762..9877
DNA (1116bp) protein (372aa)
Arsenical-resistance protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V1X8_TERSS
arsenical-resistance protein; K03325 arsenite transporter, ACR3 family
Arsenical-resistance protein {ECO:0000313|EMBL:ADV83466.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
SCNpilot_cont_750_p_scaffold_2524_12
unknown

Not on your lists

9890..10105
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_2524_13
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10143..10586
DNA (444bp) protein (148aa)
hmrR; heavy metal resistance transcriptional regulator HmrR id=12556486 bin=CNBR_ACIDO species=Ornithinimicrobium pekingense genus=Ornithinimicrobium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transcription regulator MerR DNA binding protein
Transcription regulator MerR DNA binding protein {ECO:0000313|EMBL:ADE14790.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_cont_750_p_scaffold_2524_14
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10576..10947
DNA (372bp) protein (124aa)
Uncharacterized protein {ECO:0000313|EMBL:AII54458.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
copper chaperone id=12556458 bin=CNBR_ACIDO species=Nafulsella turpanensis genus=Nafulsella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
copper chaperone
SCNpilot_cont_750_p_scaffold_2524_15
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10944..11624
DNA (681bp) protein (227aa)
thiol:disulfide interchange protein id=12556459 bin=CNBR_ACIDO species=Nafulsella turpanensis genus=Nafulsella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:AII54459.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
thiol:disulfide interchange protein
SCNpilot_cont_750_p_scaffold_2524_16
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11714..14176
DNA (2463bp) protein (821aa)
copper-translocating P-type ATPase (EC:3.6.3.4)
Heavy metal translocating P-type ATPase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHW9_9GAMM
ATPase P {ECO:0000313|EMBL:KDP87233.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
SCNpilot_cont_750_p_scaffold_2524_17
Leptospirillum ferriphilum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

14193..14417
DNA (225bp) protein (75aa)
ATPase P {ECO:0000313|EMBL:AIA29809.1}; TaxID=1441628 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferriphilum YSK.;"
copper chaperone id=12556455 bin=CNBR_ACIDO species=Cupriavidus sp. HMR-1 genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
SCNpilot_cont_750_p_scaffold_2524_18

Not on your lists

14449..15672
DNA (1224bp) protein (408aa)
Major facilitator superfamily MFS_1 n=1 Tax=mine drainage metagenome RepID=E6QMN0_9ZZZZ
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CBI08501.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative major facilitator superfamily transporter
Displaying 18 items

View Taxonomy