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SCNpilot_cont_750_p_scaffold_300

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Displaying items 1-30 of 154 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_300_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1562..2749
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFL0_9GAMM
Protein of unknown function (DUF3296)
Uncharacterized protein {ECO:0000313|EMBL:AGG89700.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_p_scaffold_300_2
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3067..4287)
DNA (1221bp) protein (407aa)
Integrase n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L3M3_FRAAD
Integrase rbh
Integrase {ECO:0000313|EMBL:AFC87392.1}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_cont_750_p_scaffold_300_trna_1
unknown

Not on your lists

comp(4462..4534)
DNA (73bp)
transferRNA
SCNpilot_cont_750_p_scaffold_300_3
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4571..5224)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035CCCB2
Sporulation protein {ECO:0000313|EMBL:GAN45711.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
sporulation related protein
SCNpilot_cont_750_p_scaffold_300_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5232..6014)
DNA (783bp) protein (261aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Type III pantothenate kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE85_9GAMM
pantothenate kinase, type III
SCNpilot_cont_750_p_scaffold_300_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6011..7048)
DNA (1038bp) protein (346aa)
Biotin-(Acetyl-CoA-carboxylase) ligase BirA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE86_9GAMM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin operon repressor {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
birA, biotin-(acetyl-CoA-carboxylase) ligase
SCNpilot_cont_750_p_scaffold_300_6
unknown

Not on your lists

7068..7454
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_300_7
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7479..8882)
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Signal transduction histidine kinase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVS1_9GAMM
signal transduction histidine kinase
SCNpilot_cont_750_p_scaffold_300_8
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8979..9671)
DNA (693bp) protein (231aa)
transcriptional regulator n=1 Tax=Dyella japonica RepID=UPI0003007667
Transcriptional regulator {ECO:0000313|EMBL:GAN45714.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
SCNpilot_cont_750_p_scaffold_300_9
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9671..9997)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVS3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45715.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_cont_750_p_scaffold_300_10
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10111..11106)
DNA (996bp) protein (332aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
tRNA-dihydrouridine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE92_9GAMM
tRNA-U16,U17-dihydrouridine synthase
SCNpilot_cont_750_p_scaffold_300_11
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11185..12054
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYW4_FRAAD
Uncharacterized protein {ECO:0000313|EMBL:KGI77820.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_300_12
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12057..12488)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D3BF2
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_cont_750_p_scaffold_300_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12584..14398
DNA (1815bp) protein (605aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH59_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98800.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_300_14
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14552..15277)
DNA (726bp) protein (242aa)
Putative polysaccharide deacetylase protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UF17_XANAP
polysaccharide deacetylase
Putative polysaccharide deacetylase protein {ECO:0000313|EMBL:CBA16774.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
SCNpilot_cont_750_p_scaffold_300_15
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15317..15757)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003662A35
Uncharacterized protein {ECO:0000313|EMBL:AIF49460.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_300_16
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15873..16811)
DNA (939bp) protein (313aa)
sugar kinase; K00856 adenosine kinase [EC:2.7.1.20]
sugar kinase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037CD3AB
Sugar kinase {ECO:0000313|EMBL:KGO98821.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
SCNpilot_cont_750_p_scaffold_300_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17011..18057
DNA (1047bp) protein (349aa)
rod shape-determining protein Mbl n=1 Tax=Dyella ginsengisoli RepID=UPI000345BFEC
Rod shape-determining protein MreB {ECO:0000313|EMBL:EIL98335.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
rod shape-determining protein MreB rbh
SCNpilot_cont_750_p_scaffold_300_18
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18392..19381
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348BDEB
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
rod shape-determining protein MreC
SCNpilot_cont_750_p_scaffold_300_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19378..19872
DNA (495bp) protein (165aa)
Rod shape-determining protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFU2_9GAMM
Rod shape-determining protein {ECO:0000313|EMBL:EIL98333.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
rod shape-determining protein MreD
SCNpilot_cont_750_p_scaffold_300_20
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19869..21788
DNA (1920bp) protein (640aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Penicillin-binding protein 2 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQF7_9GAMM
Penicillin-binding protein 2 {ECO:0000313|EMBL:GAN45200.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_cont_750_p_scaffold_300_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21785..22909
DNA (1125bp) protein (375aa)
Rod shape-determining protein RodA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQF8_9GAMM
Rod shape-determining protein RodA {ECO:0000313|EMBL:EIL89449.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cell elongation-specific peptidoglycan biosynthesis regulator RodA rbh
SCNpilot_cont_750_p_scaffold_300_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23771..26635
DNA (2865bp) protein (955aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKR3_9GAMM
SCNpilot_cont_750_p_scaffold_300_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26645..27181)
DNA (537bp) protein (179aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Peptide deformylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNX5_9GAMM
peptide deformylase
SCNpilot_cont_750_p_scaffold_300_24
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27265..28143)
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003173DF9
Glycosyl transferase family 2 {ECO:0000313|EMBL:AIF49300.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative glycosyltransferase
SCNpilot_cont_750_p_scaffold_300_25
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28277..30997)
DNA (2721bp) protein (907aa)
General secretion pathway protein D n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W358_9GAMM
General secretion pathway protein GspD {ECO:0000313|EMBL:AHX14930.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
general secretion pathway protein D
SCNpilot_cont_750_p_scaffold_300_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31045..31731)
DNA (687bp) protein (229aa)
General secretion pathway protein N n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W359_9GAMM
General secretion pathway protein N {ECO:0000313|EMBL:EIL93900.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_300_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31728..32324)
DNA (597bp) protein (199aa)
General secretion pathway protein GspM n=1 Tax=Rhodanobacter sp. 115 RepID=I4W756_9GAMM
General secretion pathway protein GspM {ECO:0000313|EMBL:EIL88098.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Tfp pilus assembly protein PilO
SCNpilot_cont_750_p_scaffold_300_28
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32314..33441)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003604D0C
Fimbrial assembly protein {ECO:0000313|EMBL:GAN45825.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Tfp pilus assembly protein PilN
SCNpilot_cont_750_p_scaffold_300_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33455..34345)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000371E1EC
General secretion pathway protein GspK {ECO:0000313|EMBL:GAN45824.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
type II secretory pathway, component PulK
Displaying items 1-30 of 154 in total

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