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SCNpilot_cont_750_p_scaffold_782

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Displaying items 1-30 of 84 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_782_1

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3..107
DNA (105bp) protein (35aa)
Elongation factor Tu n=6 Tax=Edwardsiella RepID=C5BGM7_EDWI9
Uncharacterized protein {ECO:0000313|EMBL:KKN07196.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
elongation factor Tu; K02358 elongation factor Tu
SCNpilot_cont_750_p_scaffold_782_2
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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247..558
DNA (312bp) protein (104aa)
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
30S ribosomal protein S10 id=2431938 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
SCNpilot_cont_750_p_scaffold_782_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


569..1210
DNA (642bp) protein (214aa)
50S ribosomal protein L3 n=1 Tax=Dyella japonica RepID=UPI00031AF103
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
LSU ribosomal protein L3P
SCNpilot_cont_750_p_scaffold_782_4
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1222..1827
DNA (606bp) protein (202aa)
50S ribosomal protein L4 n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYK4_FRAAD
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_cont_750_p_scaffold_782_5

Not on your lists


1824..2120
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=1 Tax=mine drainage metagenome RepID=T1B8W0_9ZZZZ
50S ribosomal protein L23 {ECO:0000313|EMBL:EQD50620.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal protein L23
SCNpilot_cont_750_p_scaffold_782_6
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2141..2965
DNA (825bp) protein (275aa)
50S ribosomal protein L2 n=1 Tax=Dyella ginsengisoli RepID=UPI00034717B5
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
LSU ribosomal protein L2P
SCNpilot_cont_750_p_scaffold_782_7

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2978..3277
DNA (300bp) protein (100aa)
Ribosomal protein S19, bacterial-type n=1 Tax=mine drainage metagenome RepID=T1A185_9ZZZZ
Ribosomal protein S19, bacterial-type {ECO:0000313|EMBL:EQD50622.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
SCNpilot_cont_750_p_scaffold_782_8

Not on your lists


3277..3624
DNA (348bp) protein (116aa)
Ribosomal protein L22, bacterial-type n=1 Tax=mine drainage metagenome RepID=T1A129_9ZZZZ
Ribosomal protein L22, bacterial-type {ECO:0000313|EMBL:EQD50623.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
LSU ribosomal protein L22P
SCNpilot_cont_750_p_scaffold_782_9
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3627..4400
DNA (774bp) protein (258aa)
30S ribosomal protein S3 n=1 Tax=Rudaea cellulosilytica RepID=UPI000366C5E2
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
SCNpilot_cont_750_p_scaffold_782_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4404..4817
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDS3_9GAMM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
SCNpilot_cont_750_p_scaffold_782_11
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4817..5017
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000381F043
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
SCNpilot_cont_750_p_scaffold_782_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5017..5295
DNA (279bp) protein (93aa)
30S ribosomal protein S17 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ56_9GAMM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SSU ribosomal protein S17P
SCNpilot_cont_750_p_scaffold_782_13

Not on your lists


5309..5677
DNA (369bp) protein (123aa)
Ribosomal protein L14, bacterial-type n=2 Tax=mine drainage metagenome RepID=T1A188_9ZZZZ
Ribosomal protein L14, bacterial-type {ECO:0000313|EMBL:EQD50627.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
LSU ribosomal protein L14P
SCNpilot_cont_750_p_scaffold_782_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5837..6151
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Dyella japonica RepID=UPI0002E7A12E
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ribosomal protein L24, bacterial/organelle
SCNpilot_cont_750_p_scaffold_782_15
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6162..6701
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4DF36
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 rbh
SCNpilot_cont_750_p_scaffold_782_16
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6718..7023
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B60885
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_cont_750_p_scaffold_782_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7167..7562
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL55_9GAMM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ribosomal protein S8
SCNpilot_cont_750_p_scaffold_782_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7581..8105
DNA (525bp) protein (175aa)
50S ribosomal protein L6 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNK3_9GAMM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
LSU ribosomal protein L6P
SCNpilot_cont_750_p_scaffold_782_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8108..8464
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=1 Tax=Dyella japonica RepID=UPI000315AEAA
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
SCNpilot_cont_750_p_scaffold_782_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8705..9223
DNA (519bp) protein (173aa)
30S ribosomal protein S5 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNK5_9GAMM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
SCNpilot_cont_750_p_scaffold_782_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9213..9413
DNA (201bp) protein (67aa)
50S ribosomal protein L30 n=1 Tax=Dyella ginsengisoli RepID=UPI000344A08F
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
LSU ribosomal protein L30P
SCNpilot_cont_750_p_scaffold_782_22
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9564..9995
DNA (432bp) protein (144aa)
50S ribosomal protein L15 n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYM2_FRAAD
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_cont_750_p_scaffold_782_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10002..11330
DNA (1329bp) protein (443aa)
Protein translocase subunit SecY n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNK8_9GAMM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
preprotein translocase, SecY subunit
SCNpilot_cont_750_p_scaffold_782_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11490..11846
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=2 Tax=Rhodanobacter RepID=I4WKT4_9GAMM
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_750_p_scaffold_782_25
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12044..12433
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=11 Tax=Stenotrophomonas RepID=RS11_STRM5
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
SCNpilot_cont_750_p_scaffold_782_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12435..13064
DNA (630bp) protein (210aa)
30S ribosomal protein S4 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKT6_9GAMM
SSU ribosomal protein S4P
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_p_scaffold_782_27
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13201..14199
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit alpha n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNL2_9GAMM
SCNpilot_cont_750_p_scaffold_782_28
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14293..14676
DNA (384bp) protein (128aa)
50S ribosomal protein L17 n=1 Tax=Dyella ginsengisoli RepID=UPI00036F5379
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_cont_750_p_scaffold_782_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14795..15346
DNA (552bp) protein (184aa)
Disulfide bond formation protein B n=1 Tax=Rhodanobacter denitrificans RepID=M4NBX2_9GAMM
disulfide bond formation protein DsbB
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_p_scaffold_782_30
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15349..16740
DNA (1392bp) protein (464aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WKU0_9GAMM
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:KGI77421.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Displaying items 1-30 of 84 in total

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