ggKbase home page

SCNpilot_cont_750_p_scaffold_5674

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_5674_1

Not on your lists

3..107
DNA (105bp) protein (35aa)
Elongation factor Tu n=6 Tax=Edwardsiella RepID=C5BGM7_EDWI9
Uncharacterized protein {ECO:0000313|EMBL:KKN07196.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
elongation factor Tu; K02358 elongation factor Tu
SCNpilot_cont_750_p_scaffold_5674_trna_1
unknown

Not on your lists

256..328
DNA (73bp)
transferRNA
SCNpilot_cont_750_p_scaffold_5674_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

332..763
DNA (432bp) protein (144aa)
Protein translocase subunit SecE n=2 Tax=Rhodanobacter RepID=I4WGB0_9GAMM
preprotein translocase, SecE subunit
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_p_scaffold_5674_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

767..1339
DNA (573bp) protein (191aa)
Transcription termination/antitermination protein NusG n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8S9_9GAMM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcription termination/antitermination factor NusG; K02601 transcriptional antiterminator NusG rbh
SCNpilot_cont_750_p_scaffold_5674_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1504..1935
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=2 Tax=Rhodanobacter RepID=I4WGB2_9GAMM
LSU ribosomal protein L11P
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_p_scaffold_5674_5

Not on your lists


1937..2644
DNA (708bp) protein (236aa)
50s ribosomal protein l1 n=1 Tax=mine drainage metagenome RepID=T0ZAT5_9ZZZZ
50s ribosomal protein l1 {ECO:0000313|EMBL:EQD42178.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal protein L1
SCNpilot_cont_750_p_scaffold_5674_6

Not on your lists


3055..3579
DNA (525bp) protein (175aa)
50s ribosomal protein l10 n=1 Tax=mine drainage metagenome RepID=T0ZN36_9ZZZZ
50s ribosomal protein l10 {ECO:0000313|EMBL:EQD45892.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_cont_750_p_scaffold_5674_7
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3702..4079
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVH8_PSEUU
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_cont_750_p_scaffold_5674_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4460..8503
DNA (4044bp) protein (1348aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit beta n=1 Tax=Dyella ginsengisoli RepID=UPI0003462B2D
SCNpilot_cont_750_p_scaffold_5674_9

Not on your lists

8649..8921
DNA (273bp) protein (91aa)
DNA-directed RNA polymerase, beta' subunit (Fragment) n=3 Tax=mine drainage metagenome RepID=T0ZCA8_9ZZZZ
DNA-directed RNA polymerase, beta' subunit {ECO:0000313|EMBL:EQD55858.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rpoC; DNA-directed RNA polymerase beta' subunit
Displaying 10 items

View Taxonomy