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SCNpilot_cont_750_p_scaffold_1175

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_1175_trna_1
unknown

Not on your lists

comp(1..71)
DNA (71bp)
transferRNA
SCNpilot_cont_750_p_scaffold_1175_1
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

379..1809
DNA (1431bp) protein (477aa)
aldehyde dehydrogenase; K00154 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] rbh
Aldehyde dehydrogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1I8P9_9BRAD
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_750_p_scaffold_1175_2
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1852..3462
DNA (1611bp) protein (537aa)
glucose-methanol-choline oxidoreductase; K00119 [EC:1.1.99.-] rbh
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H5Z0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF79881.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_750_p_scaffold_1175_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3788..4570
DNA (783bp) protein (261aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20ZV7_RHOPB
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABD89329.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_p_scaffold_1175_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4581..4994)
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q219M5_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD86911.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_p_scaffold_1175_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5115..5957
DNA (843bp) protein (281aa)
beta-lactamase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037C93FE
Beta-lactamase {ECO:0000313|EMBL:KIZ34884.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Beta-lactamase-like
SCNpilot_cont_750_p_scaffold_1175_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6040..6882
DNA (843bp) protein (281aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10); K01826 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] rbh
5-carboxymethyl-2-hydroxymuconate delta-isomerase {ECO:0000313|EMBL:ABE41304.1}; EC=5.3.3.10 {ECO:0000313|EMBL:ABE41304.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q131D5_RHOPS
SCNpilot_cont_750_p_scaffold_1175_7
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6976..7593
DNA (618bp) protein (206aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Putative Glutathione S-transferase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUS4_9BRAD
Glutathione S-transferase {ECO:0000313|EMBL:ETR77061.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_cont_750_p_scaffold_1175_8
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7838..8380)
DNA (543bp) protein (181aa)
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
Methylated-DNA-[protein]-cysteine S-methyltransferase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H575_9BRAD
Cysteine methyltransferase {ECO:0000313|EMBL:KJC47147.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_750_p_scaffold_1175_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8511..9428)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRH1_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31054.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
transcriptional regulatory protein, LysR family
SCNpilot_cont_750_p_scaffold_1175_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9536..10234
DNA (699bp) protein (233aa)
Pirin n=2 Tax=Oligotropha carboxidovorans RepID=B6JBZ7_OLICO
pirin family protein; K06911
Pirin family protein {ECO:0000313|EMBL:AEI07576.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_p_scaffold_1175_11
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10388..10987
DNA (600bp) protein (200aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
NAD(P)H dehydrogenase (quinone) n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZEN3_9BRAD
flavoprotein WrbA rbh
SCNpilot_cont_750_p_scaffold_1175_12
unknown

Not on your lists

11117..11239
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_1175_13
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11315..11545)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QG37_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09979.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_1175_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11704..12075
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBS4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37070.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_1175_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12093..13622)
DNA (1530bp) protein (510aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S706_9BRAD
Permease {ECO:0000313|EMBL:KIZ42990.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
permease; K01992 ABC-2 type transport system permease protein rbh
SCNpilot_cont_750_p_scaffold_1175_16
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13619..14389)
DNA (771bp) protein (257aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IEK3_9BRAD
ABC transporter {ECO:0000313|EMBL:KJC57679.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein rbh
SCNpilot_cont_750_p_scaffold_1175_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14587..16119
DNA (1533bp) protein (511aa)
carboxypeptidase-related protein (EC:3.4.16.-)
carboxypeptidase n=1 Tax=Rhizobium leguminosarum RepID=UPI000380B39F
Carboxypeptidase {ECO:0000313|EMBL:AHF86594.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_cont_750_p_scaffold_1175_18
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16311..16613
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035C4A6F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL79366.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_750_p_scaffold_1175_19
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16772..18355
DNA (1584bp) protein (528aa)
acyl-CoA synthetase (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
acyl-CoA synthetase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037DF19D
Bll7864 protein {ECO:0000313|EMBL:BAC53129.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_750_p_scaffold_1175_20
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18377..19009)
DNA (633bp) protein (211aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KMM3_9GAMM
Glutathione S-transferase {ECO:0000313|EMBL:EPC03362.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
SCNpilot_cont_750_p_scaffold_1175_21
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19036..19803)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000382DC28
conserved membrane protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CCC98600.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_750_p_scaffold_1175_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19861..22071)
DNA (2211bp) protein (737aa)
phsA2; thiosulfate reductase PhsA (EC:2.8.1.5) rbh
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003652384
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_cont_750_p_scaffold_1175_23
Leptolyngbya sp. Heron Island J, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(22227..23645)
DNA (1419bp) protein (473aa)
Oxidoreductase n=1 Tax=Leptolyngbya sp. Heron Island J RepID=U9VP37_9CYAN
Oxidoreductase {ECO:0000313|EMBL:ESA33782.1}; TaxID=1385935 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. Heron Island J.;"
oxidoreductase
SCNpilot_cont_750_p_scaffold_1175_24
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23970..26147
DNA (2178bp) protein (726aa)
malic enzyme; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase {ECO:0000313|EMBL:ACA15767.1}; EC=1.1.1.40 {ECO:0000313|EMBL:ACA15767.1};; EC=2.3.1.8 {ECO:0000313|EMBL:ACA15767.1};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UGS4_METS4
SCNpilot_cont_750_p_scaffold_1175_25
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

26271..27341
DNA (1071bp) protein (357aa)
diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7]
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Diaminopimelate epimerase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZ82_OPITP
SCNpilot_cont_750_p_scaffold_1175_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27372..28076)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002FBDCEC
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_cont_750_p_scaffold_1175_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28076..28816)
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00036D4865
ABC transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_cont_750_p_scaffold_1175_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28800..29723)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000375C515
amino acid ABC transporter; K01998 branched-chain amino acid transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_cont_750_p_scaffold_1175_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29726..30595)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EC2748
amino acid ABC transporter; K01997 branched-chain amino acid transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Displaying items 1-30 of 31 in total

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