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SCNpilot_cont_750_p_scaffold_689

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Displaying items 1-30 of 50 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_689_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..463)
DNA (462bp) protein (154aa)
cobT2; cobalt chelatase pCobT subunit; K09883 cobaltochelatase CobT [EC:6.6.1.2]
hypothetical protein, partial n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B428B2
CobT protein {ECO:0000313|EMBL:CAE25940.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_750_p_scaffold_689_2
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(621..1619)
DNA (999bp) protein (333aa)
cobS; cobalt insertion protein; K09882 cobaltochelatase CobS [EC:6.6.1.2] rbh
Cobalt insertion protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0FZB2_9BRAD
Cobalt insertion protein {ECO:0000313|EMBL:BAL73849.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_750_p_scaffold_689_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1930..2586
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQW0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61387.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_p_scaffold_689_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2670..3323)
DNA (654bp) protein (218aa)
Heat shock protein DnaJ-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQW1_NITHX
heat shock protein DnaJ-like
Heat shock protein DnaJ-like protein {ECO:0000313|EMBL:ABE61386.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_p_scaffold_689_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3454..3720
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NYW0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33664.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
BolA-like protein; K05527 BolA protein
SCNpilot_cont_750_p_scaffold_689_6
Pseudomonas sp., Proteobacteria, Bacteria

Not on your lists

comp(3751..4455)
DNA (705bp) protein (235aa)
3-oxoacyl-ACP reductase n=1 Tax=Pseudomonas mosselii SJ10 RepID=V6UU28_9PSED
3-oxoacyl-ACP reductase; TaxID=306 species="Bacteria; Proteobacteria.;" source="Pseudomonas sp.;"
putative oxidoreductase, SDR family rbh
SCNpilot_cont_750_p_scaffold_689_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4513..5862)
DNA (1350bp) protein (450aa)
DNA-binding protein n=1 Tax=Afipia birgiae RepID=UPI000306FA39
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61382.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_p_scaffold_689_8
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5885..7036)
DNA (1152bp) protein (384aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
aroB; 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4] rbh
3-dehydroquinate synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H6F5_9BRAD
SCNpilot_cont_750_p_scaffold_689_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7033..7659)
DNA (627bp) protein (209aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Shikimate kinase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13EF7_RHOPS
SCNpilot_cont_750_p_scaffold_689_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7810..7956
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQW8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61379.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_p_scaffold_689_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8136..9104
DNA (969bp) protein (323aa)
Tyrosine recombinase XerD n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQW9_NITHX
tyrosine recombinase XerD; K04763 integrase/recombinase XerD
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_p_scaffold_689_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9282..10244
DNA (963bp) protein (321aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 4
acetyl-CoA carboxylase carboxyltransferase subunit alpha; K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG19_9BRAD
SCNpilot_cont_750_p_scaffold_689_13
unknown

Not on your lists

comp(10167..10313)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_689_14
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10530..12011
DNA (1482bp) protein (494aa)
Polyphosphate kinase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H6F0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC51750.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_689_15
unknown

Not on your lists

12224..13117
DNA (894bp) protein (298aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_689_16
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13277..16123)
DNA (2847bp) protein (949aa)
Protein translocase subunit SecA n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WR17_9BRAD
azi, div; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA rbh
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_750_p_scaffold_689_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16724..17623
DNA (900bp) protein (300aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J2S0_RHOP2
SCNpilot_cont_750_p_scaffold_689_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17674..18948
DNA (1275bp) protein (425aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase (EC:2.3.1.1 2.3.1.35); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] rbh
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQX4_NITHX
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_p_scaffold_689_19
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18948..19349
DNA (402bp) protein (134aa)
mutator protein mutT (EC:3.6.1.-); K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-]
NUDIX hydrolase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WR20_9BRAD
NUDIX hydrolase {ECO:0000313|EMBL:EAQ37573.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_750_p_scaffold_689_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19480..20331)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P945_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37309.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
methyltransferase
SCNpilot_cont_750_p_scaffold_689_21
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20421..21230
DNA (810bp) protein (270aa)
amidophosphoribosyltransferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003796F74
competence protein F rbh
Competence protein F {ECO:0000313|EMBL:BAL05520.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_750_p_scaffold_689_22
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21274..21546
DNA (273bp) protein (91aa)
Glutaredoxin 3 n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TXG1_9BRAD
Glutaredoxin 3 {ECO:0000313|EMBL:CCE11149.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
glutaredoxin GrxC; K03676 glutaredoxin 3
SCNpilot_cont_750_p_scaffold_689_23
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21546..22424
DNA (879bp) protein (293aa)
Hit-like protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GQ78_9BRAD
Amidohydrolase {ECO:0000313|EMBL:KJC51667.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
amidohydrolase rbh
SCNpilot_cont_750_p_scaffold_689_24
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22421..22882
DNA (462bp) protein (154aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J475_RHOP2
Uncharacterized protein {ECO:0000313|EMBL:KJC51666.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_689_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22887..23786)
DNA (900bp) protein (300aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BZ5_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD86091.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_p_scaffold_689_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24052..24813)
DNA (762bp) protein (254aa)
3-demethylubiquinone-9 3-methyltransferase; K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] rbh
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0F5_9BRAD
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_750_p_scaffold_689_27
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24830..25297)
DNA (468bp) protein (156aa)
Membrane-flanked domain n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQY4_NITHX
membrane-flanked domain-containing protein
Membrane-flanked domain {ECO:0000313|EMBL:ABE61363.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_p_scaffold_689_28
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25458..26711
DNA (1254bp) protein (418aa)
aspartate kinase; K00928 aspartate kinase [EC:2.7.2.4] rbh
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Aspartokinase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J421_RHOP2
SCNpilot_cont_750_p_scaffold_689_29
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26731..27393
DNA (663bp) protein (221aa)
Multiple antibiotic resistance (MarC)-related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0F8_9BRAD
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
antibiotic resistance protein; K05595 multiple antibiotic resistance protein
SCNpilot_cont_750_p_scaffold_689_30
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27665..29932
DNA (2268bp) protein (756aa)
phosphoenolpyruvate-protein phosphotransferase PtsP; K08484 phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] rbh
PTSINtr with GAF domain, PtsP n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BZ8_RHOPB
PTSINtr with GAF domain, PtsP {ECO:0000313|EMBL:ABD86088.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Displaying items 1-30 of 50 in total

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