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SCNpilot_cont_750_p_scaffold_150

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Displaying items 1-30 of 142 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_150_1
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2250..3251)
DNA (1002bp) protein (334aa)
integrase n=1 Tax=Janthinobacterium lividum RepID=UPI0002887B8B
Integrase {ECO:0000313|EMBL:KEH08437.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
integrase/recombinase rbh
SCNpilot_cont_750_p_scaffold_150_trna_1
unknown

Not on your lists

comp(3392..3465)
DNA (74bp)
transferRNA
SCNpilot_cont_750_p_scaffold_150_2
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3491..3880)
DNA (390bp) protein (130aa)
50S ribosomal protein L17 n=2 Tax=Acidovorax RepID=RL17_ACIET
50S ribosomal protein L17-like
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
SCNpilot_cont_750_p_scaffold_150_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3971..4963)
DNA (993bp) protein (331aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Alicycliphilus denitrificans RepID=E8TUF2_ALIDB
SCNpilot_cont_750_p_scaffold_150_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5077..5700)
DNA (624bp) protein (208aa)
30S ribosomal protein S4 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037DCCAA
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 rbh
SCNpilot_cont_750_p_scaffold_150_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5795..6199)
DNA (405bp) protein (135aa)
30S ribosomal protein S11 n=5 Tax=cellular organisms RepID=RS11_DELAS
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000255|HAMAP-Rule:MF_01310}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_cont_750_p_scaffold_150_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6216..6581)
DNA (366bp) protein (122aa)
30S ribosomal protein S13 n=4 Tax=Comamonadaceae RepID=RS13_ACIET
rpsM; 30S ribosomal protein s13; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_cont_750_p_scaffold_150_7
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6840..8159)
DNA (1320bp) protein (440aa)
Protein translocase subunit SecY n=4 Tax=Delftia RepID=A9BRX1_DELAS
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_cont_750_p_scaffold_150_8
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8176..8607)
DNA (432bp) protein (144aa)
50S ribosomal protein L15 n=1 Tax=Acidovorax sp. KKS102 RepID=K0I6A2_9BURK
50S ribosomal protein L15
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_cont_750_p_scaffold_150_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8618..8800)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=2 Tax=Alicycliphilus denitrificans RepID=E8TUF9_ALIDB
50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_cont_750_p_scaffold_150_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8827..9348)
DNA (522bp) protein (174aa)
30S ribosomal protein S5 n=2 Tax=Acidovorax RepID=RS5_ACIET
rpsE; 30S ribosomal protein s5; K02988 small subunit ribosomal protein S5 rbh
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_cont_750_p_scaffold_150_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9361..9726)
DNA (366bp) protein (122aa)
50S ribosomal protein L18 n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002ED3DEF
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_cont_750_p_scaffold_150_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9741..10274)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000372DE7A
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
SCNpilot_cont_750_p_scaffold_150_13
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10297..10692)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=2 Tax=Delftia acidovorans RepID=S2WVD5_DELAC
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_cont_750_p_scaffold_150_14
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10715..11020)
DNA (306bp) protein (102aa)
UPI0003D3D3F5 related cluster n=1 Tax=unknown RepID=UPI0003D3D3F5
30S ribosomal protein S14-like
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
SCNpilot_cont_750_p_scaffold_150_15
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11029..11568)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=2 Tax=Delftia acidovorans RepID=S2WF28_DELAC
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
SCNpilot_cont_750_p_scaffold_150_16
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11580..11900)
DNA (321bp) protein (107aa)
50S ribosomal protein L24 n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002378169
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
50S ribosomal protein L24 {ECO:0000255|HAMAP-Rule:MF_01326}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_cont_750_p_scaffold_150_17
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11915..12283)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=3 Tax=Acidovorax RepID=K0I9Z6_9BURK
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
SCNpilot_cont_750_p_scaffold_150_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12456..14048)
DNA (1593bp) protein (531aa)
glycerol-3-phosphate dehydrogenase (EC:1.1.5.3); K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:AEB86674.1}; EC=1.1.5.3 {ECO:0000313|EMBL:AEB86674.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Glycerol-3-phosphate dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8E9_ALIDK
SCNpilot_cont_750_p_scaffold_150_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14167..15897)
DNA (1731bp) protein (577aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J3CR70_9BURK
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EJL76879.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_cont_750_p_scaffold_150_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15990..16298)
DNA (309bp) protein (103aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2XA38_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD36769.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
putative integral membrane protein
SCNpilot_cont_750_p_scaffold_150_21
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16298..17116)
DNA (819bp) protein (273aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MBU3_ACIET
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACM31863.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_cont_750_p_scaffold_150_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17113..18003)
DNA (891bp) protein (297aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVV4_VARPE
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU36432.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_750_p_scaffold_150_23
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18000..19076)
DNA (1077bp) protein (359aa)
Carbohydrate ABC transporter ATP-binding protein, CUT1 family n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TJS1_ACIAC
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EYC52662.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
ABC transporter-like protein; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_cont_750_p_scaffold_150_24
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19080..20177)
DNA (1098bp) protein (366aa)
Multiple sugar transport system ATP-binding protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WWR7_DELAC
ABC transporter {ECO:0000313|EMBL:KEH14732.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
ABC transporter-like protein; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_cont_750_p_scaffold_150_25
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20213..21076
DNA (864bp) protein (288aa)
DeoR family transcriptional regulator n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KTP8_9BURK
DeoR family transcriptional regulator {ECO:0000313|EMBL:EGI76927.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
DeoR family transcriptional regulator; K02444 DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
SCNpilot_cont_750_p_scaffold_150_26
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21127..22650
DNA (1524bp) protein (508aa)
glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30]
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
Glycerol kinase n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=GLPK_DELAS
SCNpilot_cont_750_p_scaffold_150_27
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22753..23586
DNA (834bp) protein (278aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
pyrroline-5-carboxylate reductase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035FF5BA
SCNpilot_cont_750_p_scaffold_150_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23607..24500)
DNA (894bp) protein (298aa)
4-hydroxybenzoate octaprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00210629}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00272707};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
4-hydroxybenzoate octaprenyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8F4_ALIDK
SCNpilot_cont_750_p_scaffold_150_29
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24565..25071)
DNA (507bp) protein (169aa)
DNA-binding protein n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002378584
Ferritin {ECO:0000313|EMBL:EYC52668.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
ferritin dps family protein
Displaying items 1-30 of 142 in total

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