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SCNpilot_cont_750_p_scaffold_340

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Displaying items 1-30 of 91 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_340_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2..1243
DNA (1242bp) protein (414aa)
30S ribosomal protein S1 n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TSA7_ACIAC
30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_cont_750_p_scaffold_340_2
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1298..1606
DNA (309bp) protein (103aa)
Integration host factor subunit beta n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RRC6_COMTE
integration host factor subunit beta; K05788 integration host factor subunit beta
Integration host factor subunit beta {ECO:0000256|RuleBase:RU003941, ECO:0000256|SAAS:SAAS00062449}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
SCNpilot_cont_750_p_scaffold_340_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1690..1980
DNA (291bp) protein (97aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TU24_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85599.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_cont_750_p_scaffold_340_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1970..3136
DNA (1167bp) protein (389aa)
UPI0003D3F1A9 related cluster n=1 Tax=unknown RepID=UPI0003D3F1A9
Lipopolysaccharide assembly protein B {ECO:0000256|HAMAP-Rule:MF_00994}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_340_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3186..6110
DNA (2925bp) protein (975aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K05559 multicomponent K+:H+ antiporter subunit A
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:AEB85602.1}; EC=1.6.99.5 {ECO:0000313|EMBL:AEB85602.1};; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
NADH dehydrogenase (Quinone) n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G912_ALIDK
SCNpilot_cont_750_p_scaffold_340_6
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6110..6481
DNA (372bp) protein (124aa)
Multisubunit potassium/proton antiporter, PhaC subunit n=2 Tax=Acidovorax RepID=A1W8R1_ACISJ
Na(+) H(+) antiporter subunit C {ECO:0000313|EMBL:CDS54514.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
monovalent cation/h+ antiporter subunit c; K05560 multicomponent K+:H+ antiporter subunit C
SCNpilot_cont_750_p_scaffold_340_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6478..8157
DNA (1680bp) protein (560aa)
NADH/Ubiquinone/plastoquinone (Complex I) n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHE3_ACIET
monovalent cation/h+ antiporter subunit d; K05561 multicomponent K+:H+ antiporter subunit D
NADH/Ubiquinone/plastoquinone (Complex I) {ECO:0000313|EMBL:ACM32848.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_cont_750_p_scaffold_340_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8154..8645
DNA (492bp) protein (164aa)
cation:proton antiporter n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003603591
Multisubunit Na+/H+ antiporter, MnhE subunit {ECO:0000313|EMBL:GAD21973.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
monovalent cation/h+ antiporter subunit e; K05562 multicomponent K+:H+ antiporter subunit E
SCNpilot_cont_750_p_scaffold_340_9
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8642..8923
DNA (282bp) protein (94aa)
Multisubunit potassium/proton antiporter, PhaF subunit n=2 Tax=Acidovorax RepID=A1W8R4_ACISJ
multiple resistance and pH regulation protein F; K05563 multicomponent K+:H+ antiporter subunit F
Multisubunit potassium/proton antiporter, PhaF subunit {ECO:0000313|EMBL:ABM42639.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_cont_750_p_scaffold_340_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8920..9303
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003624BFC
Multisubunit Na+/H+ antiporter, MnhG subunit {ECO:0000313|EMBL:GAD21971.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Na+/h+ antiporter subunit; K05564 multicomponent K+:H+ antiporter subunit G
SCNpilot_cont_750_p_scaffold_340_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9330..9800)
DNA (471bp) protein (157aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Alicycliphilus denitrificans RepID=E8TZD0_ALIDB
transcriptional regulator, rrf2 family; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:AEB83622.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_cont_750_p_scaffold_340_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9874..10086)
DNA (213bp) protein (71aa)
SlyX family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZD6_ALIDB
slyx family protein; K03745 SlyX protein
SlyX family protein {ECO:0000313|EMBL:AEB83616.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_cont_750_p_scaffold_340_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10092..11294)
DNA (1203bp) protein (401aa)
GntR family transcriptional regulator id=12552720 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
aminotransferase class i and ii
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_cont_750_p_scaffold_340_14
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11376..12020
DNA (645bp) protein (215aa)
endonuclease III/DNA-(apurinic or apyrimidinic site) lyase (EC:3.2.2.- 4.2.99.18); K10773 endonuclease III [EC:4.2.99.18]
Endonuclease III n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q129X9_POLSJ
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_cont_750_p_scaffold_340_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12021..13556)
DNA (1536bp) protein (512aa)
glutamate-cysteine ligase (EC:6.3.2.2); K01919 glutamate--cysteine ligase [EC:6.3.2.2] rbh
Glutamate--cysteine ligase {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391};; Gamma-ECS {ECO:0000256|HAMAP-Rule:MF_00578}; Gamma-glutamylcysteine synthetase {ECO:0000256|HAMAP-Rule:MF_00578}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Glutamate--cysteine ligase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8V6_ACISJ
SCNpilot_cont_750_p_scaffold_340_16
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13649..14557)
DNA (909bp) protein (303aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8V7_ACISJ
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM42682.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_cont_750_p_scaffold_340_17
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14648..15526
DNA (879bp) protein (293aa)
NUDIX hydrolase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZ40_ALIDB
nudix hydrolase rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_cont_750_p_scaffold_340_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15527..16453)
DNA (927bp) protein (309aa)
branched-chain amino acid transferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035E1467
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase {ECO:0000313|EMBL:GAD21350.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
class IV aminotransferase rbh
SCNpilot_cont_750_p_scaffold_340_19
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16642..16929
DNA (288bp) protein (96aa)
Ferredoxin n=1 Tax=Acidovorax sp. CF316 RepID=J1ECW7_9BURK
Ferredoxin {ECO:0000313|EMBL:EJE50089.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ferredoxin
SCNpilot_cont_750_p_scaffold_340_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17035..18189
DNA (1155bp) protein (385aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
3,4-dihydroxy-2-butanone 4-phosphate synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ38_ALIDB
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000313|EMBL:ADU99747.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_cont_750_p_scaffold_340_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18199..18663
DNA (465bp) protein (155aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
6,7-dimethyL-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Variovorax sp. CF313 RepID=J2K8D1_9BURK
SCNpilot_cont_750_p_scaffold_340_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18660..19148
DNA (489bp) protein (163aa)
N utilization substance protein B homolog n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GAI5_ALIDK
NusB antitermination factor; K03625 N utilization substance protein B
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_cont_750_p_scaffold_340_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19171..20355
DNA (1185bp) protein (395aa)
Aspartate transaminase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GAI4_ALIDK
aminotransferase class i and ii rbh
Aminotransferase class I and II {ECO:0000313|EMBL:ADU99744.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_cont_750_p_scaffold_340_24
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20355..20771
DNA (417bp) protein (139aa)
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I777_9BURK
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:KJA10822.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
tol-pal system-associated acyl-CoA thioesterase
SCNpilot_cont_750_p_scaffold_340_25
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20768..21469
DNA (702bp) protein (234aa)
Cell division and transport-associated protein TolQ n=2 Tax=Acidovorax RepID=A1W9I7_ACISJ
protein tolq; K03562 biopolymer transport protein TolQ
Protein TolQ {ECO:0000313|EMBL:ACM33699.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_cont_750_p_scaffold_340_26
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21485..21913
DNA (429bp) protein (143aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TBE1_ACIDE
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EER58203.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR
SCNpilot_cont_750_p_scaffold_340_27
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21910..22887
DNA (978bp) protein (326aa)
cell envelope biogenesis protein TolA n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00036D64E5
TolA {ECO:0000313|EMBL:GAD21359.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
protein tola; K03646 colicin import membrane protein rbh
SCNpilot_cont_750_p_scaffold_340_28
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22939..23352
DNA (414bp) protein (138aa)
Hemerythrin HHE cation binding domain-containing protein 2 n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F570_9BURK
Hemerythrin HHE cation binding domain protein {ECO:0000313|EMBL:CDM22680.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hemerythrin HHE cation binding domain-containing protein 2
SCNpilot_cont_750_p_scaffold_340_29
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23475..25211)
DNA (1737bp) protein (579aa)
D-lactate dehydrogenase {ECO:0000256|PIRNR:PIRNR000101}; EC=1.1.1.28 {ECO:0000256|PIRNR:PIRNR000101};; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
D-lactate dehydrogenase (EC:1.1.1.28); K03777 D-lactate dehydrogenase [EC:1.1.1.28]
D-lactate dehydrogenase n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2X875_DELAC
SCNpilot_cont_750_p_scaffold_340_30
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25208..26347)
DNA (1140bp) protein (380aa)
FMN-dependent alpha-hydroxy acid dehydrogenase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T829_ACIDE
FMN-dependent alpha-hydroxy acid dehydrogenase {ECO:0000313|EMBL:EER59371.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
l-lactate dehydrogenase [cytochrome]-like
Displaying items 1-30 of 91 in total

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