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SCNpilot_cont_750_p_scaffold_599

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Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_599_1
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31..945)
DNA (915bp) protein (305aa)
Replication protein RepC n=4 Tax=Pseudomonas aeruginosa RepID=S0I7W8_PSEAI
repC; replication protein, RepC rbh
Tax=BJP_IG2103_Dechloromonas_60_92
SCNpilot_cont_750_p_scaffold_599_2
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(917..1795)
DNA (879bp) protein (293aa)
Replicative helicase, RepA n=4 Tax=Pseudomonas aeruginosa RepID=Q02RR8_PSEAB
repA; replicative helicase, RepA; K07505 hypothetical protein rbh
Plasmid and phage replicative helicase {ECO:0000313|EMBL:ABM42700.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_cont_750_p_scaffold_599_3
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1811..2032)
DNA (222bp) protein (74aa)
Uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=S0I4P8_PSEAI
Plasmid-related protein
Plasmid-related protein {ECO:0000313|EMBL:CCJ49541.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain Bpp5).;"
SCNpilot_cont_750_p_scaffold_599_4
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2124..3104
DNA (981bp) protein (327aa)
Uncharacterized protein n=5 Tax=Pseudomonas aeruginosa RepID=R8Z7Z5_PSEAI
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM42702.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_cont_750_p_scaffold_599_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3184..3429
DNA (246bp) protein (82aa)
Uncharacterized protein n=4 Tax=Pseudomonas aeruginosa RepID=R8Z834_PSEAI
phage transcriptional regulator AlpA; K07733 prophage regulatory protein
Phage transcriptional regulator, AlpA {ECO:0000313|EMBL:ABM42703.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_cont_750_p_scaffold_599_6
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3519..4721)
DNA (1203bp) protein (401aa)
Integrase n=5 Tax=Pseudomonas aeruginosa RepID=R8Z7Y4_PSEAI
integrase rbh
Integrase {ECO:0000313|EMBL:KFA04488.1}; TaxID=1094183 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. musacearum NCPPB 2005.;"
SCNpilot_cont_750_p_scaffold_599_7
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5028..6644)
DNA (1617bp) protein (539aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] rbh
GMP synthase [glutamine-hydrolyzing] n=2 Tax=Delftia acidovorans RepID=S2WCB2_DELAC
SCNpilot_cont_750_p_scaffold_599_8
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6676..7110)
DNA (435bp) protein (145aa)
Uncharacterized protein n=5 Tax=Bacteria RepID=A9C214_DELAS
hypothetical protein
PIN domain protein {ECO:0000313|EMBL:KFJ08981.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
SCNpilot_cont_750_p_scaffold_599_9
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7107..7376)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XAT9_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42377.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
prevent-host-death family protein
SCNpilot_cont_750_p_scaffold_599_10
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7520..8449)
DNA (930bp) protein (310aa)
LysR family transcriptional regulator n=1 Tax=Chryseobacterium taeanense RepID=UPI00030EFDA3
LysR family transcriptional regulator {ECO:0000313|EMBL:KEH13912.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_750_p_scaffold_599_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8543..10237
DNA (1695bp) protein (565aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] rbh
Dihydroxy-acid dehydratase n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WX10_DELAC
SCNpilot_cont_750_p_scaffold_599_12
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10351..11826)
DNA (1476bp) protein (492aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
Inosine-5'-monophosphate dehydrogenase n=3 Tax=Delftia RepID=F6B206_DELSC
SCNpilot_cont_750_p_scaffold_599_13
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11911..12465
DNA (555bp) protein (185aa)
membrane protein n=1 Tax=Chryseobacterium taeanense RepID=UPI0002F51CC3
Membrane protein {ECO:0000313|EMBL:KEH09975.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_599_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12485..12829)
DNA (345bp) protein (115aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WGU7_DELAC
UPF0125 protein HMPREF9701_04268 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein; K09801 hypothetical protein
SCNpilot_cont_750_p_scaffold_599_15
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12822..13274)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WDM5_DELAC
cyclase/dehydrase rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD37401.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
SCNpilot_cont_750_p_scaffold_599_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13443..13916
DNA (474bp) protein (158aa)
SsrA-binding protein n=2 Tax=Delftia acidovorans RepID=S2WX15_DELAC
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
SsrA-binding protein; K03664 SsrA-binding protein rbh
SCNpilot_cont_750_p_scaffold_599_17
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14026..14442
DNA (417bp) protein (139aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WCC0_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42385.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_599_18
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14473..15006
DNA (534bp) protein (178aa)
RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Delftia acidovorans RepID=S2WSQ0_DELAC
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:EPD37404.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily rbh
SCNpilot_cont_750_p_scaffold_599_19
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15017..15853
DNA (837bp) protein (279aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WGV1_DELAC
Transmembrane anti-sigma factor {ECO:0000313|EMBL:KEH13906.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
putative transmembrane anti-sigma factor rbh
SCNpilot_cont_750_p_scaffold_599_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15869..16564)
DNA (696bp) protein (232aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WDM8_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD37406.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_599_21
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16721..17386
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WX20_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD37407.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
TetR family transcriptional regulator rbh
SCNpilot_cont_750_p_scaffold_599_22
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17462..18553)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WCC5_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD37408.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
3-hydroxyisobutyryl-CoA hydrolase rbh
SCNpilot_cont_750_p_scaffold_599_23
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18707..19720)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WSQ5_DELAC
Uncharacterized protein {ECO:0000313|EMBL:KEH09966.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_599_24
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19763..20260)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6B218_DELSC
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:AEF90738.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_cont_750_p_scaffold_599_25
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20274..21458)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WRI9_DELAC
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KEH13901.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
L-carnitine dehydratase/bile acid-inducible protein F rbh
SCNpilot_cont_750_p_scaffold_599_26
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21542..22432
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XSC4_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42394.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_750_p_scaffold_599_27
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22554..24410)
DNA (1857bp) protein (619aa)
GTP-binding protein TypA/BipA n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WCD0_DELAC
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:EPD37413.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
GTP-binding protein TypA; K06207 GTP-binding protein rbh
SCNpilot_cont_750_p_scaffold_599_28
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24407..25372)
DNA (966bp) protein (322aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
truB; tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] rbh
tRNA pseudouridine synthase B n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2XC47_DELAC
SCNpilot_cont_750_p_scaffold_599_29
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25377..25748)
DNA (372bp) protein (124aa)
Ribosome-binding factor A n=2 Tax=Delftia acidovorans RepID=S2WGW1_DELAC
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
SCNpilot_cont_750_p_scaffold_599_30
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25755..28610)
DNA (2856bp) protein (952aa)
Translation initiation factor IF-2 n=2 Tax=Delftia acidovorans RepID=S2WDN5_DELAC
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
translation initiation factor IF-2; K02519 translation initiation factor IF-2 rbh
Displaying items 1-30 of 57 in total

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