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SCNpilot_cont_750_p_scaffold_2793

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_2793_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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474..2726
DNA (2253bp) protein (751aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] rbh
Replication restart DNA helicase PriA n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6K3_NITMU
SCNpilot_cont_750_p_scaffold_2793_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2833..3735)
DNA (903bp) protein (301aa)
Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL20_9PROT
Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation {ECO:0000313|EMBL:CCU63644.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
fructosamine kinase rbh
SCNpilot_cont_750_p_scaffold_2793_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3751..5097)
DNA (1347bp) protein (449aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
argininosuccinate lyase (EC:4.3.2.1); K01755 argininosuccinate lyase [EC:4.3.2.1] rbh
Argininosuccinate lyase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLT1_9PROT
SCNpilot_cont_750_p_scaffold_2793_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5370..6980)
DNA (1611bp) protein (537aa)
Peptide chain release factor 3 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6K0_NITMU
prfC; peptide chain release factor 3; K02837 peptide chain release factor 3 rbh
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_750_p_scaffold_2793_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6998..9133)
DNA (2136bp) protein (712aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6J9_NITMU
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIO49244.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein rbh
SCNpilot_cont_750_p_scaffold_2793_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9147..10634)
DNA (1488bp) protein (496aa)
Oligopeptide transport system permease protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWI4_9PROT
Peptide ABC transporter permease {ECO:0000313|EMBL:KIO49245.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
binding-protein dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein rbh
SCNpilot_cont_750_p_scaffold_2793_7
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10653..11630)
DNA (978bp) protein (326aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6J7_NITMU
binding-protein dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABB75624.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_750_p_scaffold_2793_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11623..13854)
DNA (2232bp) protein (744aa)
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLS7_9PROT
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIO49454.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
extracellular solute-binding protein rbh
SCNpilot_cont_750_p_scaffold_2793_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13897..14775
DNA (879bp) protein (293aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Short-chain dehydrogenase/reductase SDR; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9] rbh
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJN9_9PROT
SCNpilot_cont_750_p_scaffold_2793_10
unknown

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comp(14785..14889)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 10 items

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