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SCNpilot_cont_750_p_scaffold_498

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Displaying items 1-30 of 55 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_498_1
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1590)
DNA (1590bp) protein (530aa)
UBA/THIF-type NAD/FAD binding fold protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC39_NITMU
UBA/THIF-type NAD/FAD binding domain-containing protein rbh
UBA/THIF-type NAD/FAD binding fold protein {ECO:0000313|EMBL:ABB73682.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_750_p_scaffold_498_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1899..2672)
DNA (774bp) protein (258aa)
Possible long-chain N-acyl amino acid synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ92_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO50548.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
long-chain N-acyl amino acid synthase
SCNpilot_cont_750_p_scaffold_498_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3086..3868)
DNA (783bp) protein (261aa)
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] rbh
Inositol-1-monophosphatase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHK6_9PROT
Inositol monophosphatase {ECO:0000313|EMBL:KIO50469.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_750_p_scaffold_498_4
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3872..4429)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC35_NITMU
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:AKH38355.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_498_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4574..5413
DNA (840bp) protein (280aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
16S ribosomal RNA methyltransferase RsmE; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJV4_9PROT
SCNpilot_cont_750_p_scaffold_498_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5493..6848
DNA (1356bp) protein (452aa)
Amino-acid acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01105}; EC=2.3.1.1 {ECO:0000256|HAMAP-Rule:MF_01105};; N-acetylglutamate synthase {ECO:0000256|HAMAP-Rule:MF_01105}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
N-acetylglutamate synthase (EC:2.3.1.1); K14682 amino-acid N-acetyltransferase [EC:2.3.1.1] rbh
Amino-acid acetyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTV0_9PROT
SCNpilot_cont_750_p_scaffold_498_7
unknown

Not on your lists

comp(6801..6926)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_498_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6965..7237
DNA (273bp) protein (91aa)
Probable Fe(2+)-trafficking protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHK9_9PROT
Probable Fe(2+)-trafficking protein {ECO:0000256|HAMAP-Rule:MF_00686, ECO:0000256|SAAS:SAAS00073862}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_498_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7334..9415
DNA (2082bp) protein (694aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
polyphosphate kinase (EC:2.7.4.1); K00937 polyphosphate kinase [EC:2.7.4.1] rbh
Polyphosphate kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJC9_9PROT
SCNpilot_cont_750_p_scaffold_498_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9538..11088
DNA (1551bp) protein (517aa)
Adenylate cyclase {ECO:0000313|EMBL:CCU62788.1}; EC=4.6.1.1 {ECO:0000313|EMBL:CCU62788.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Adenylate cyclase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJV8_9PROT
adenylate cyclase rbh
SCNpilot_cont_750_p_scaffold_498_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11209..12273)
DNA (1065bp) protein (355aa)
Fructose-bisphosphate aldolase class II {ECO:0000313|EMBL:CCU62789.1}; EC=4.1.2.13 {ECO:0000313|EMBL:CCU62789.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
fructose-1,6-bisphosphate aldolase (EC:4.1.2.13); K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13] rbh
Fructose-bisphosphate aldolase class II n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ97_9PROT
SCNpilot_cont_750_p_scaffold_498_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12364..13818)
DNA (1455bp) protein (485aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] rbh
Pyruvate kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTV5_9PROT
SCNpilot_cont_750_p_scaffold_498_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13863..15041)
DNA (1179bp) protein (393aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] rbh
Phosphoglycerate kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHL2_9PROT
SCNpilot_cont_750_p_scaffold_498_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15178..16176)
DNA (999bp) protein (333aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160, ECO:0000313|EMBL:KIO50460.1}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
glyceraldehyde-3-phosphate dehydrogenase, type I; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] rbh
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJD1_9PROT
SCNpilot_cont_750_p_scaffold_498_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16246..18261)
DNA (2016bp) protein (672aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
transketolase (EC:2.2.1.1); K00615 transketolase [EC:2.2.1.1] rbh
Transketolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJW2_9PROT
SCNpilot_cont_750_p_scaffold_498_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18560..19810)
DNA (1251bp) protein (417aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJA1_9PROT
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:CCU62794.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
two component sigma-54 specific Fis family transcriptional regulator rbh
SCNpilot_cont_750_p_scaffold_498_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19925..22093)
DNA (2169bp) protein (723aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Nitrogen regulation protein NtrY n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTV9_9PROT
multi-sensor signal transduction histidine kinase rbh
SCNpilot_cont_750_p_scaffold_498_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22090..22710)
DNA (621bp) protein (207aa)
Probable proline rich signal peptide protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHL5_9PROT
Proline rich signal peptide protein {ECO:0000313|EMBL:KIO50547.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
proline rich signal peptide protein
SCNpilot_cont_750_p_scaffold_498_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22688..23974)
DNA (1287bp) protein (429aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] rbh
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJD5_9PROT
SCNpilot_cont_750_p_scaffold_498_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23953..24918)
DNA (966bp) protein (322aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] rbh
Methionyl-tRNA formyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=FMT_NITMU
SCNpilot_cont_750_p_scaffold_498_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25039..25542)
DNA (504bp) protein (168aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC19_NITMU
SCNpilot_cont_750_p_scaffold_498_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26152..27237
DNA (1086bp) protein (362aa)
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJD9_9PROT
DNA-binding protein {ECO:0000313|EMBL:KIO50454.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
DNA processing protein DprA; K04096 DNA processing protein rbh
SCNpilot_cont_750_p_scaffold_498_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27466..29997
DNA (2532bp) protein (844aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
DNA topoisomerase III (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2] rbh
DNA topoisomerase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJA7_9PROT
SCNpilot_cont_750_p_scaffold_498_24
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30094..30348)
DNA (255bp) protein (85aa)
Acyl carrier protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC16_NITMU
phosphopantetheine-binding
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_750_p_scaffold_498_25
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30364..31584)
DNA (1221bp) protein (407aa)
3-oxoacyl-[acyl-carrier-protein] synthase, KASII n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHM3_9PROT
3-oxoacyl-ACP synthase {ECO:0000313|EMBL:KIO50452.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
beta-ketoacyl synthase rbh
SCNpilot_cont_750_p_scaffold_498_26
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31764..32018)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC14_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB73707.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_750_p_scaffold_498_27
unknown

Not on your lists

comp(32312..32527)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_498_28
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32606..33748
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJE1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62807.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_498_29
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33758..34609
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJB1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62809.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_cont_750_p_scaffold_498_30
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34596..35660
DNA (1065bp) protein (355aa)
FIG000906: Predicted Permease n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHM5_9PROT
Permease {ECO:0000313|EMBL:KIO50446.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
permease YjgP/YjgQ; K11720 lipopolysaccharide export system permease protein rbh
Displaying items 1-30 of 55 in total

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