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SCNpilot_cont_750_p_scaffold_1044

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Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_1044_1
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..600)
DNA (600bp) protein (200aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037E4E0A
Probable d-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EDP64495.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_cont_750_p_scaffold_1044_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

722..2296
DNA (1575bp) protein (525aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
leuA; 2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] rbh
2-isopropylmalate synthase n=3 Tax=Acidiphilium RepID=A5FVX6_ACICJ
SCNpilot_cont_750_p_scaffold_1044_3
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2412..3455
DNA (1044bp) protein (348aa)
Rod shape-determining protein mreB n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS34_GRABC
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins rbh
Rod shape-determining protein mreB {ECO:0000313|EMBL:AHJ63362.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
SCNpilot_cont_750_p_scaffold_1044_4
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3553..4416
DNA (864bp) protein (288aa)
Cell shape-determining protein MreC n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS35_GRABC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC rbh
SCNpilot_cont_750_p_scaffold_1044_5
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4441..5019
DNA (579bp) protein (193aa)
Rod shape-determining protein mreD n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS36_GRABC
Rod shape-determining protein MreD {ECO:0000313|EMBL:GAN77182.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
rod shape-determining protein mreD; K03571 rod shape-determining protein MreD
SCNpilot_cont_750_p_scaffold_1044_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5012..6871
DNA (1860bp) protein (620aa)
Cell elongation specific D,D-transpeptidase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS37_GRABC
Cell division/elongation transpeptidase FtsI/penicillin-binding protein {ECO:0000313|EMBL:GAN77183.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
cell elongation specific D,D-transpeptidase; K05515 penicillin-binding protein 2
SCNpilot_cont_750_p_scaffold_1044_7
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6885..8036
DNA (1152bp) protein (384aa)
Rod shape-determining protein RodA n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A147_9PROT
Rod shape-determining protein RodA {ECO:0000313|EMBL:GAN77184.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
rod shape-determining protein rodA; K05837 rod shape determining protein RodA rbh
SCNpilot_cont_750_p_scaffold_1044_8
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8267..9235)
DNA (969bp) protein (323aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Rhizobium sp. CF080 RepID=J2TJ56_9RHIZ
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:KGD96315.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
extracellular solute-binding protein family 5; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_750_p_scaffold_1044_9
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9235..9684)
DNA (450bp) protein (150aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Rhizobium sp. CF080 RepID=J2TJ56_9RHIZ
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:KGD96315.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Twin-arginine translocation pathway signal
SCNpilot_cont_750_p_scaffold_1044_10
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9718..9948)
DNA (231bp) protein (77aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Rhizobium sp. CF080 RepID=J2TJ56_9RHIZ
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:KGD96315.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_cont_750_p_scaffold_1044_11
Actibacterium mucosum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10077..10319
DNA (243bp) protein (81aa)
Peptidase M28 {ECO:0000313|EMBL:KAJ55365.1}; TaxID=1454373 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium mucosum KCTC 23349.;"
SCNpilot_cont_750_p_scaffold_1044_12
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10486..11193
DNA (708bp) protein (236aa)
Putative transcriptional regulator with a cAMP binding domain, Crp family n=1 Tax=Azospirillum brasilense Sp245 RepID=G8B0S5_AZOBR
putative transcriptional regulator with a cAMP binding domain, Crp family
Putative transcriptional regulator with a cAMP binding domain, Crp family {ECO:0000313|EMBL:CCD03784.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_750_p_scaffold_1044_13
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11255..12544
DNA (1290bp) protein (430aa)
homogentisate 1,2-dioxygenase (EC:1.13.11.5) rbh
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
homogentisate 1,2-dioxygenase n=1 Tax=Pseudomonas nitroreducens RepID=UPI000304395F
SCNpilot_cont_750_p_scaffold_1044_14
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12541..13860
DNA (1320bp) protein (440aa)
fumarylacetoacetase; K01555 fumarylacetoacetase [EC:3.7.1.2] rbh
Fumarylacetoacetase {ECO:0000313|EMBL:ABS68561.1}; EC=3.7.1.2 {ECO:0000313|EMBL:ABS68561.1};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
fumarylacetoacetase n=1 Tax=Roseomonas sp. B5 RepID=UPI00030C1911
SCNpilot_cont_750_p_scaffold_1044_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13857..14498
DNA (642bp) protein (214aa)
pyrrolidone-carboxylate peptidase (EC:3.4.19.3); K01304 pyroglutamyl-peptidase [EC:3.4.19.3]
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI0003637F08
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_750_p_scaffold_1044_16
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14544..15140)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036A848E
Electron transport transmembrane protein Sco1/SenC/PrrC {ECO:0000313|EMBL:GAN76155.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein; K07152
SCNpilot_cont_750_p_scaffold_1044_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15121..17070)
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EES9_BRASB
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCNpilot_cont_750_p_scaffold_1044_18
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17074..17439)
DNA (366bp) protein (122aa)
Copper resistance protein CopC n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T3A2_9BURK
Copper resistance protein CopC {ECO:0000313|EMBL:EDT41935.1}; Flags: Precursor;; TaxID=396597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria MEX-5.;"
copper resistance protein CopC; K07156
SCNpilot_cont_750_p_scaffold_1044_19
unknown

Not on your lists

comp(17502..17963)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_1044_20
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18054..18827)
DNA (774bp) protein (258aa)
ABC transporter-like protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
Hemin import ATP-binding protein HmuV {ECO:0000256|HAMAP-Rule:MF_01718, ECO:0000256|SAAS:SAAS00041307}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01718, ECO:0000256|SAAS:SAAS00041330};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
hemin ABC transporter ATP-binding protein n=1 Tax=Nevskia ramosa RepID=UPI0003B31DB7
SCNpilot_cont_750_p_scaffold_1044_21
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18824..19837)
DNA (1014bp) protein (338aa)
Transport system permease protein n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RTW3_ALLVD
transport system permease; K02015 iron complex transport system permease protein
Hemin ABC transporter, permease protein {ECO:0000313|EMBL:EXJ16453.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
SCNpilot_cont_750_p_scaffold_1044_22
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19834..20691)
DNA (858bp) protein (286aa)
hemin ABC transporter substrate-binding protein n=1 Tax=Methyloversatilis universalis RepID=UPI00036463F8
Hemin-binding periplasmic protein hmuT {ECO:0000313|EMBL:EGK72310.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
periplasmic-binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_cont_750_p_scaffold_1044_23
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20688..21710)
DNA (1023bp) protein (341aa)
Haemin-degrading family protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPH3_PARL1
hemin-degrading family protein; K07225 putative hemin transport protein rbh
Haemin-degrading family protein {ECO:0000313|EMBL:ABS61806.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_750_p_scaffold_1044_24
Leishmania major, Leishmania, Kinetoplastida, Eukaryota

Not on your lists

comp(21725..22852)
DNA (1128bp) protein (376aa)
PREDICTED: uncharacterized protein LOC100208015 n=1 Tax=unknown RepID=UPI0002B4A5BA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBZ12659.1}; TaxID=5664 species="Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania.;" source="Leishmania major.;"
SCNpilot_cont_750_p_scaffold_1044_25
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22858..25053)
DNA (2196bp) protein (732aa)
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein (Fragment) n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RJF8_9PROT
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein {ECO:0000313|EMBL:EFH12562.1}; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_cont_750_p_scaffold_1044_26
unknown

Not on your lists

comp(25147..25317)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_1044_27
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25490..25804)
DNA (315bp) protein (105aa)
UspA domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPV5_9RHIZ
UspA domain-containing protein {ECO:0000313|EMBL:EHK57222.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
UspA domain-containing protein
SCNpilot_cont_750_p_scaffold_1044_28
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26560..26943
DNA (384bp) protein (128aa)
Putative transporter n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J571_ACIMA
putative transporter; K07301 inner membrane protein
Putative transporter {ECO:0000313|EMBL:KDM66730.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
SCNpilot_cont_750_p_scaffold_1044_29
unknown

Not on your lists

26937..27077
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_1044_30
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27109..29706
DNA (2598bp) protein (866aa)
cation-transporting ATPase (EC:3.6.3.-); K01537 Ca2+-transporting ATPase [EC:3.6.3.8]
Cation-transporting ATPase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J572_ACIMA
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
Displaying items 1-30 of 32 in total

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