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SCNpilot_cont_750_p_scaffold_511

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Displaying items 1-30 of 75 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_511_trna_4
unknown

Not on your lists

comp(120..190)
DNA (71bp)
transferRNA
SCNpilot_cont_750_p_scaffold_511_trna_3
unknown

Not on your lists

comp(240..322)
DNA (83bp)
transferRNA
SCNpilot_cont_750_p_scaffold_511_1
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

487..2277
DNA (1791bp) protein (597aa)
recJ; single-stranded-DNA-specific exonuclease recJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] rbh
Single-stranded-DNA-specific exonuclease recJ n=1 Tax=Oceanibaculum indicum P24 RepID=K2KE50_9PROT
Single-stranded-DNA-specific exonuclease recJ {ECO:0000313|EMBL:EKE75580.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_cont_750_p_scaffold_511_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2274..3017
DNA (744bp) protein (248aa)
Putative phosphoribosyl transferase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6D3_AZOL4
Uncharacterized protein {ECO:0000313|EMBL:AIL13193.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative phosphoribosyl transferase
SCNpilot_cont_750_p_scaffold_511_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3025..3291
DNA (267bp) protein (89aa)
Glutaredoxin n=1 Tax=Rhodanobacter denitrificans RepID=I4WYB8_9GAMM
Glutaredoxin {ECO:0000313|EMBL:AIL13194.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Glutaredoxin, GrxC family
SCNpilot_cont_750_p_scaffold_511_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3518..3790
DNA (273bp) protein (91aa)
transcriptional regulator n=1 Tax=Algicola sagamiensis RepID=UPI00037D6DD4
Uncharacterized protein {ECO:0000313|EMBL:AIL13195.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
bacterial nucleoid DNA-binding protein
SCNpilot_cont_750_p_scaffold_511_5
unknown

Not on your lists

comp(3980..5305)
DNA (1326bp) protein (442aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_511_6
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5408..6388
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225C218
Uncharacterized protein {ECO:0000313|EMBL:AIK97071.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_511_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6419..6850)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IQ37_RHOCS
Uncharacterized protein {ECO:0000313|EMBL:AIL13197.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_511_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6847..7758)
DNA (912bp) protein (304aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
lipoyl synthase id=3529501 bin=GWA1_Alphaproteobacteria_45_9 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
lipA; lipoyl synthase
SCNpilot_cont_750_p_scaffold_511_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7774..9186)
DNA (1413bp) protein (471aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
dihydrolipoyl dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2KK27_9PROT
SCNpilot_cont_750_p_scaffold_511_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9294..9986
DNA (693bp) protein (231aa)
Response regulator receiver:Transcriptional regulatory protein, C-terminal n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U0Z6_9PROT
Chemotaxis protein CheY {ECO:0000313|EMBL:AIL13200.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
two-component response transcriptional regulator (OmpR family)
SCNpilot_cont_750_p_scaffold_511_11
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9983..11308
DNA (1326bp) protein (442aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
two-component sensor histidine kinase; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
Sensor histidine kinase n=1 Tax=Oceanibaculum indicum P24 RepID=K2IFQ8_9PROT
SCNpilot_cont_750_p_scaffold_511_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11308..12141
DNA (834bp) protein (278aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
lactate dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI000368A6E3
conserved hypothetical protein possibly involved in catabolism of external DNA (COG2961 domain)
SCNpilot_cont_750_p_scaffold_511_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12571..13089)
DNA (519bp) protein (173aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
two-component system sensor histidine kinase (EC:2.7.13.3)
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225AC4C
SCNpilot_cont_750_p_scaffold_511_14
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13498..14388
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Candidatus Pelagibacter ubique HTCC1002 RepID=Q1UZS3_PELUQ
Membrane protein {ECO:0000313|EMBL:EZH73922.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_511_15
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14381..14977
DNA (597bp) protein (199aa)
Uncharacterized protein n=60 Tax=Pseudomonas aeruginosa RepID=G4LDX5_PSEAI
hypothetical protein
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:AHB56475.1}; TaxID=1415629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa MTB-1.;"
SCNpilot_cont_750_p_scaffold_511_16
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14937..15821)
DNA (885bp) protein (295aa)
Transcriptional regulator n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NR42_AZOS1
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAI70871.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_cont_750_p_scaffold_511_17
unknown

Not on your lists

comp(15978..16115)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_cont_750_p_scaffold_511_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16491..16862
DNA (372bp) protein (124aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acantham
DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=RPOZ_MAGSA
SCNpilot_cont_750_p_scaffold_511_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16976..19114
DNA (2139bp) protein (713aa)
Guanosine polyphosphate pyrophosphohydrolase/synthetase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AG68_9PROT
GTP pyrophosphokinase {ECO:0000313|EMBL:AIL13207.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
guanosine polyphosphate pyrophosphohydrolase/synthetase rbh
SCNpilot_cont_750_p_scaffold_511_20
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(19177..19617)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI000367E38C
hypothetical protein
Tax=RBG_16_Nitrospirae_43_8_curated
SCNpilot_cont_750_p_scaffold_511_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19806..22229)
DNA (2424bp) protein (808aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
lon; ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Lon protease n=3 Tax=Acidiphilium RepID=A5FX06_ACICJ
SCNpilot_cont_750_p_scaffold_511_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22326..23591)
DNA (1266bp) protein (422aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SRR2_RHOPH
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
clpX; ATP-dependent Clp protease ATP-binding subunit clpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
SCNpilot_cont_750_p_scaffold_511_23
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23699..24331)
DNA (633bp) protein (211aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
protease subunit of ATP-dependent Clp protease; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2YA05_9PROT
SCNpilot_cont_750_p_scaffold_511_24
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24353..25720)
DNA (1368bp) protein (456aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Trigger factor n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3SD11_9PROT
peptidyl-prolyl cis-trans isomerase trigger factor; K03545 trigger factor
SCNpilot_cont_750_p_scaffold_511_trna_2
unknown

Not on your lists

comp(25761..25842)
DNA (82bp)
transferRNA
SCNpilot_cont_750_p_scaffold_511_25
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26246..27574
DNA (1329bp) protein (443aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
ATPase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EXJ8_9PROT
SCNpilot_cont_750_p_scaffold_511_26
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27710..29545
DNA (1836bp) protein (612aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hflB; cell division protease; K03798 cell division protease FtsH [EC:3.4.24.-]
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NT97_AZOS1
SCNpilot_cont_750_p_scaffold_511_27
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29628..29939)
DNA (312bp) protein (104aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13214.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Displaying items 1-30 of 75 in total

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