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SCNpilot_expt_1000_bf_scaffold_695

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_695_1
Nannochloropsis salina, Nannochloropsis, Eustigmatales, Eustigmatophyceae, Eukaryota

Not on your lists

comp(216..1718)
DNA (1503bp) protein (501aa)
Cytochrome c oxidase subunit 1 {ECO:0000256|RuleBase:RU000369}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU000369};; TaxID=5749 species="Eukaryota; Stramenopiles; Eustigmatophyceae; Eustigmatales; Monodopsidaceae; Nannochloropsis.;" source="Nannochloropsis salina.;"
cox1; cytochrome c oxidase subunit 1; K02256 cytochrome c oxidase subunit 1 [EC:1.9.3.1]
Cytochrome c oxidase subunit 1 n=2 Tax=Nannochloropsis RepID=K9ZXT9_9STRA rbh
SCNpilot_expt_1000_bf_scaffold_695_2
Thalassiosira pseudonana, Thalassiosira, Thalassiosirales, Coscinodiscophyceae, Bacillariophyta, Eukaryota

Not on your lists

comp(1843..2172)
DNA (330bp) protein (110aa)
NADH dehydrogenase subunit 4L n=1 Tax=Thalassiosira pseudonana RepID=Q3S283_THAPS
NADH dehydrogenase subunit 4L {ECO:0000313|EMBL:AAZ99421.1}; TaxID=35128 species="Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira.;" source="Thalassiosira pseudonana (Marine diatom) (Cyclotella nana).;"
NADH-ubiquinone oxidoreductase subunit 4L
SCNpilot_expt_1000_bf_scaffold_695_3
Chlorella variabilis, Chlorella, Chlorellales, Trebouxiophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(2204..3016)
DNA (813bp) protein (271aa)
Cytochrome c oxidase subunit 3 n=1 Tax=Chlorella sp. ArM0029B RepID=U5U830_9CHLO rbh
Cytochrome c oxidase subunit 3 {ECO:0000256|RuleBase:RU003375}; TaxID=554065 species="Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella.;" source="Chlorella variabilis (Green alga).;"
cox3; cytochrome oxidase subunit 3 rbh
SCNpilot_expt_1000_bf_scaffold_695_4
Thalassiosira pseudonana, Thalassiosira, Thalassiosirales, Coscinodiscophyceae, Bacillariophyta, Eukaryota

Not on your lists


comp(3124..3501)
DNA (378bp) protein (126aa)
Ribosomal protein S12 n=1 Tax=Thalassiosira pseudonana RepID=Q3S295_THAPS
Ribosomal protein S12 {ECO:0000313|EMBL:AAZ99409.1}; TaxID=35128 species="Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira.;" source="Thalassiosira pseudonana (Marine diatom) (Cyclotella nana).;"
rps12; ribosomal protein S12
SCNpilot_expt_1000_bf_scaffold_695_5
unknown

Not on your lists

comp(4728..4949)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_695_6
unknown

Not on your lists

comp(6658..7110)
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_695_7
unknown

Not on your lists

comp(7146..7361)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_695_8
Heterosigma akashiwo, Heterosigma, Chattonellales, Raphidophyceae, Eukaryota

Not on your lists

comp(7381..8526)
DNA (1146bp) protein (382aa)
atp6; Atp6; K02126 F-type H+-transporting ATPase subunit a [EC:3.6.3.14]
ATP synthase subunit a n=1 Tax=Heterosigma akashiwo RepID=D2Z268_9STRA
ATP synthase subunit a {ECO:0000256|RuleBase:RU004450}; TaxID=2829 species="Eukaryota; Stramenopiles; Raphidophyceae; Chattonellales; Chattonellaceae; Heterosigma.;" source="Heterosigma akashiwo (Chromophytic alga) (Heterosigma carterae).;"
SCNpilot_expt_1000_bf_scaffold_695_9
Chlorokybus atmophyticus, Chlorokybus, Chlorokybales, Chlorokybophyceae, Streptophyta, Viridiplantae

Not on your lists


comp(8697..9041)
DNA (345bp) protein (115aa)
Ribosomal protein S10 n=1 Tax=Chlorokybus atmophyticus RepID=A6YEB1_CHLAT
Ribosomal protein S10 {ECO:0000313|EMBL:ABO15114.1}; TaxID=3144 species="Eukaryota; Viridiplantae; Streptophyta; Chlorokybophyceae; Chlorokybales; Chlorokybaceae; Chlorokybus.;" source="Chlorokybus atmophyticus (Soil alga).;"
SCNpilot_expt_1000_bf_scaffold_695_10
Cycas taitungensis, Cycas, Cycadales, Cycadidae, Streptophyta, Viridiplantae

Not on your lists

comp(9044..9616)
DNA (573bp) protein (191aa)
nad9; NADH dehydrogenase subunit 9; K03936 NADH dehydrogenase (ubiquinone) Fe-S protein 3 [EC:1.6.5.3 1.6.99.3]
NADH dehydrogenase subunit 9 n=1 Tax=Cycas taitungensis RepID=E1CBH2_CYCTA
NADH dehydrogenase subunit 9 {ECO:0000313|EMBL:BAJ22093.1}; TaxID=54799 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Cycadidae; Cycadales; Cycadaceae; Cycas.;" source="Cycas taitungensis (Prince sago) (Cycas taiwaniana).;"
SCNpilot_expt_1000_bf_scaffold_695_11
Bathycoccus prasinos, Bathycoccus, Mamiellales, Mamiellophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(9619..10575)
DNA (957bp) protein (319aa)
NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Andalucia godoyi RepID=M4QBL1_9EUKA
NADH dehydrogenase subunit 1 {ECO:0000313|EMBL:CCO13962.1}; TaxID=41875 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus.;" source="Bathycoccus prasinos.;"
nad1_1; NADH dehydrogenase subunit 1.1
SCNpilot_expt_1000_bf_scaffold_695_12
Cafeteria roenbergensis, Cafeteria, Bicosoecida, Eukaryota

Not on your lists

comp(12660..13538)
DNA (879bp) protein (293aa)
Cytochrome c oxidase subunit 2 n=1 Tax=Cafeteria roenbergensis RepID=Q9TAK4_CAFRO
Cytochrome c oxidase subunit 2 {ECO:0000256|RuleBase:RU000457}; TaxID=33653 species="Eukaryota; Stramenopiles; Bicosoecida; Cafeteriaceae; Cafeteria.;" source="Cafeteria roenbergensis (Marine flagellate).;"
cytochrome c oxidase polypeptide II; K02261 cytochrome c oxidase subunit 2
SCNpilot_expt_1000_bf_scaffold_695_13
unknown

Not on your lists

comp(13676..14467)
DNA (792bp) protein (264aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_695_14
Gloeochaete wittrockiana, Gloeochaete, Gloeochaetales, Glaucocystophyceae, Eukaryota

Not on your lists

comp(14773..14997)
DNA (225bp) protein (75aa)
atp9, OrsajM_p35; ATP synthase F0 subunit 9; K02128 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
ATP synthase subunit 9, mitochondrial n=1 Tax=Glaucocystis nostochinearum RepID=E9P6E3_9EUKA
ATP synthase subunit 9, mitochondrial {ECO:0000256|RuleBase:RU003575}; TaxID=38269 species="Eukaryota; Glaucocystophyceae; Gloeochaetales; Gloeochaetaceae; Gloeochaete.;" source="Gloeochaete wittrockiana.;"
SCNpilot_expt_1000_bf_scaffold_695_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15090..16964)
DNA (1875bp) protein (625aa)
30S ribosomal protein S4 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000360F13C
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
SCNpilot_expt_1000_bf_scaffold_695_16
Thermocrinis ruber, Thermocrinis, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists


comp(16964..17485)
DNA (522bp) protein (174aa)
50S ribosomal protein L6 n=1 Tax=Riesia pediculicola (strain USDA) RepID=D4G8L9_RIEPU
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=932678 species="Bacteria; Aquificae; Aquificales; Aquificaceae; Thermocrinis.;" source="Thermocrinis ruber DSM 12173.;"
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
SCNpilot_expt_1000_bf_scaffold_695_17
Rickettsiales bacterium SCGC AAA041-L04, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17498..17902)
DNA (405bp) protein (135aa)
30S ribosomal protein S8 n=2 Tax=Rhodospirillum rubrum RepID=RS8_RHORT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1607817 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales.;" source="Rickettsiales bacterium SCGC AAA041-L04.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_expt_1000_bf_scaffold_695_18
Ochromonas danica, Ochromonas, Chromulinales, Chrysophyceae, Eukaryota

Not on your lists

comp(18472..21648)
DNA (3177bp) protein (1059aa)
Cytochrome b n=1 Tax=Ochromonas danica RepID=Q9G926_OCHDN rbh
Cytochrome b {ECO:0000256|RuleBase:RU000300}; TaxID=2986 species="Eukaryota; Stramenopiles; Chrysophyceae; Chromulinales; Chromulinaceae; Ochromonas.;" source="Ochromonas danica (Golden alga).;"
cob; apocytochrome b
SCNpilot_expt_1000_bf_scaffold_695_19
unknown

Not on your lists

comp(21779..22099)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_695_20
unknown

Not on your lists

22131..22433
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_695_21
Chattonella marina, Chattonella, Chattonellales, Raphidophyceae, Eukaryota

Not on your lists

comp(22605..24605)
DNA (2001bp) protein (667aa)
NADH-ubiquinone oxidoreductase chain 5 {ECO:0000256|RuleBase:RU003404, ECO:0000256|SAAS:SAAS00061106}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU003404, ECO:0000256|SAAS:SAAS00061108};; TaxID=90936 species="Eukaryota; Stramenopiles; Raphidophyceae; Chattonellales; Chattonellaceae; Chattonella.;" source="Chattonella marina.;"
nad5; NADH dehydrogenase subunit 5; K03883 NADH-ubiquinone oxidoreductase chain 5 [EC:1.6.5.3] rbh
NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Chattonella marina RepID=D2Z207_9STRA rbh
SCNpilot_expt_1000_bf_scaffold_695_22
Reclinomonas americana, Reclinomonas, Eukaryota

Not on your lists

comp(24746..26905)
DNA (2160bp) protein (720aa)
NADH dehydrogenase subunit 11 {ECO:0000313|EMBL:AGH24397.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AGH24397.1};; TaxID=1295595 species="Eukaryota; Jakobida; Histionidae; Reclinomonas.;" source="Reclinomonas americana ATCC 50284.;"
NADH dehydrogenase subunit 11 n=1 Tax=Reclinomonas americana ATCC 50284 RepID=M4QAJ4_RECAM
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_695_23
Bartonella taylorii, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26918..27424)
DNA (507bp) protein (169aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=1094560 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella taylorii 8TBB.;"
NADH-quinone oxidoreductase subunit A n=1 Tax=Bartonella taylorii 8TBB RepID=J0RE57_BARTA
nuoA; NADH dehydrogenase subunit A
SCNpilot_expt_1000_bf_scaffold_695_24
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists


comp(27605..27982)
DNA (378bp) protein (126aa)
30S ribosomal protein S13 n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B39D24
SSU ribosomal protein S13P
Tax=RBG_13_Caldithrix_44_9_curated
SCNpilot_expt_1000_bf_scaffold_695_25
Histiona aroides, Histiona, Eukaryota

Not on your lists


28021..28830
DNA (810bp) protein (270aa)
Ribosomal protein L2 n=1 Tax=Histiona aroides RepID=M4QKQ3_9EUKA
Ribosomal protein L2 {ECO:0000313|EMBL:AGH24048.1}; TaxID=392300 species="Eukaryota; Jakobida; Histionidae; Histiona.;" source="Histiona aroides (Flagellate).;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
SCNpilot_expt_1000_bf_scaffold_695_26
alpha proteobacterium HIMB114, Pelagibacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28831..29094
DNA (264bp) protein (88aa)
30S ribosomal protein S19 n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNM9_9PROT
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=684719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae.;" source="alpha proteobacterium HIMB114.;"
SSU ribosomal protein S19p (S15e); K02965 small subunit ribosomal protein S19
SCNpilot_expt_1000_bf_scaffold_695_27
Sebaldella termitidis, Sebaldella, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists


29094..29468
DNA (375bp) protein (125aa)
30S ribosomal protein S3 n=1 Tax=Sebaldella termitidis (strain ATCC 33386 / NCTC 11300) RepID=D1AGV1_SEBTE
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=526218 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Sebaldella.;" source="Sebaldella termitidis (strain ATCC 33386 / NCTC 11300).;"
SCNpilot_expt_1000_bf_scaffold_695_28
Cafeteria roenbergensis, Cafeteria, Bicosoecida, Eukaryota

Not on your lists


29472..31568
DNA (2097bp) protein (699aa)
Ribosomal protein S3 n=1 Tax=Cafeteria roenbergensis RepID=Q9TAJ2_CAFRO
Ribosomal protein S3 {ECO:0000313|EMBL:AAF05794.1}; TaxID=33653 species="Eukaryota; Stramenopiles; Bicosoecida; Cafeteriaceae; Cafeteria.;" source="Cafeteria roenbergensis (Marine flagellate).;"
SCNpilot_expt_1000_bf_scaffold_695_29
Catenovulum agarivorans, Catenovulum, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


31572..31991
DNA (420bp) protein (140aa)
50S ribosomal protein L16 n=1 Tax=Gayadomonas joobiniege RepID=UPI00036BB204
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1328313 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Catenovulum.;" source="Catenovulum agarivorans DS-2.;"
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
SCNpilot_expt_1000_bf_scaffold_695_30
Cafeteria roenbergensis, Cafeteria, Bicosoecida, Eukaryota

Not on your lists


32033..32374
DNA (342bp) protein (114aa)
50S ribosomal protein L14 (EC:2.7.2.7); K02874 large subunit ribosomal protein L14
Ribosomal protein L14 n=1 Tax=Cafeteria roenbergensis RepID=Q9TAK1_CAFRO
Ribosomal protein L14 {ECO:0000313|EMBL:AAF05785.1}; TaxID=33653 species="Eukaryota; Stramenopiles; Bicosoecida; Cafeteriaceae; Cafeteria.;" source="Cafeteria roenbergensis (Marine flagellate).;"
Displaying items 1-30 of 33 in total

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