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SCNpilot_expt_1000_bf_scaffold_768

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_768_1
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..464
DNA (462bp) protein (154aa)
Tn3 family transposase for insertion sequence element n=5 Tax=Bacteria RepID=G2IU74_9SPHN
Tn3 family transposase for insertion sequence element
Transposase {ECO:0000313|EMBL:EQB29967.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCNpilot_expt_1000_bf_scaffold_768_2
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(590..2755)
DNA (2166bp) protein (722aa)
Putative FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:CDW96261.1}; EC=1.8.1.14 {ECO:0000313|EMBL:CDW96261.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
NADH oxidase-like protein n=1 Tax=Acidithiobacillus caldus RepID=B1A4K9_9GAMM
NADH oxidase-like protein
SCNpilot_expt_1000_bf_scaffold_768_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2745..3308)
DNA (564bp) protein (188aa)
Protein tyrosine phosphatase n=2 Tax=Oligotropha carboxidovorans RepID=B6JAP5_OLICO
protein tyrosine phosphatase
Protein-tyrosine-phosphatase {ECO:0000313|EMBL:AEI05013.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_768_4
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3517..6213)
DNA (2697bp) protein (899aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SBT8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE54286.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TonB-dependent receptor rbh
SCNpilot_expt_1000_bf_scaffold_768_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6273..7802)
DNA (1530bp) protein (510aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RX59_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48131.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_768_6
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8003..8824)
DNA (822bp) protein (274aa)
Acid phosphatase {ECO:0000256|PIRNR:PIRNR000897}; EC=3.1.3.2 {ECO:0000256|PIRNR:PIRNR000897};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
PA-phosphatase-like phosphoesterase; K09474 acid phosphatase (class A) [EC:3.1.3.2]
phosphatidic acid phosphatase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6B8E7
SCNpilot_expt_1000_bf_scaffold_768_7
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8899..9237)
DNA (339bp) protein (113aa)
ArsR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B591
ArsR family transcriptional regulator {ECO:0000313|EMBL:KER36923.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
arsR; ArsR-family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_768_8
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9381..10418
DNA (1038bp) protein (346aa)
phosphate ABC transporter substrate-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B57195 rbh
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
pstS; ABC transporter phosphate binding protein; K02040 phosphate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_768_9
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10441..11421
DNA (981bp) protein (327aa)
phosphate ABC transporter permease n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B47061 rbh
Phosphate transporter permease subunit PstC {ECO:0000313|EMBL:KAK46213.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
phosphate ABC transporter permease; K02037 phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_768_10
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11421..12263
DNA (843bp) protein (281aa)
phosphate transporter permease subunit PtsA n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B4E5A2 rbh
Transmembrane component of ABC transporter {ECO:0000313|EMBL:EJO33751.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
pstA; phosphate ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_768_11
Pseudomonas sp. AAC, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12260..13066
DNA (807bp) protein (269aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1502784 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. AAC.;"
phosphate ABC transporter ATPase; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
phosphate ABC transporter ATP-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B68B71 rbh
SCNpilot_expt_1000_bf_scaffold_768_12
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13082..13810
DNA (729bp) protein (243aa)
PhoU family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248857C
phosphate uptake regulator PhoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_768_13
unknown

Not on your lists

13821..13982
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_768_14

Not on your lists

comp(14007..15401)
DNA (1395bp) protein (465aa)
CoA-disulfide reductase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6F15B rbh
Flavoprotein oxidoreductase {ECO:0000313|EMBL:EQD27007.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
NADH oxidase-like protein rbh
SCNpilot_expt_1000_bf_scaffold_768_15
Novosphingobium sp. MBES04, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15403..16155)
DNA (753bp) protein (251aa)
Possible arsH protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N7J8_RHOPA rbh
Arsenical resistance protein ArsH {ECO:0000313|EMBL:GAM07652.1}; TaxID=1206458 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MBES04.;"
arsH; arsenical resistance protein ArsH; K11811 arsenical resistance protein ArsH rbh
SCNpilot_expt_1000_bf_scaffold_768_16
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16166..17227)
DNA (1062bp) protein (354aa)
arsenic resistance protein ArsB n=2 Tax=Xanthobacteraceae RepID=UPI00037A9146 rbh
arsenical-resistance protein; K03325 arsenite transporter, ACR3 family
Arsenical-resistance protein {ECO:0000313|EMBL:ACL73900.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_1000_bf_scaffold_768_17
Gluconacetobacter sp. SXCC-1, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17227..18174)
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003460166
arsenate reductase
Arsenate reductase {ECO:0000313|EMBL:EGG74436.1}; TaxID=1004836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter sp. SXCC-1.;"
SCNpilot_expt_1000_bf_scaffold_768_18
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18187..18516)
DNA (330bp) protein (110aa)
Regulatory protein ArsR n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F1X7_SPHCR
Scaffold1, whole genome shotgun sequence {ECO:0000313|EMBL:KIS34377.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
regulatory protein ArsR
SCNpilot_expt_1000_bf_scaffold_768_19
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18636..19289
DNA (654bp) protein (218aa)
NADPH-dependent FMN reductase, putative n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R083_9RHOB
NADPH-dependent FMN reductase, putative {ECO:0000313|EMBL:EEE43952.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
NADPH-dependent FMN reductase
SCNpilot_expt_1000_bf_scaffold_768_20
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19586..21958
DNA (2373bp) protein (791aa)
TonB-denpendent receptor, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4EFF3
Uncharacterized protein {ECO:0000313|EMBL:EQA96462.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_768_21
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21983..23056
DNA (1074bp) protein (358aa)
protein tyrosine/serine phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48] rbh
protein tyrosine phosphatase n=1 Tax=Sphingobium sp. YL23 RepID=UPI00039FAF3F rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA96461.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_expt_1000_bf_scaffold_768_22
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23154..24650
DNA (1497bp) protein (499aa)
alkaline phosphatase; K01077 alkaline phosphatase [EC:3.1.3.1]
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002E7892B
Alkaline phosphatase family protein {ECO:0000313|EMBL:EZP70165.1}; Flags: Precursor;; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_1000_bf_scaffold_768_23
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24770..25333
DNA (564bp) protein (188aa)
resolvase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037651AD rbh
Recombinase {ECO:0000313|EMBL:KKC24123.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
res; resolvase
SCNpilot_expt_1000_bf_scaffold_768_24
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25365..25994)
DNA (630bp) protein (210aa)
UPI0003D65806 related cluster n=1 Tax=unknown RepID=UPI0003D65806 rbh
Phosphoglycerate mutase {ECO:0000313|EMBL:KKC24122.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
phosphoglycerate mutase rbh
SCNpilot_expt_1000_bf_scaffold_768_25
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25995..26276)
DNA (282bp) protein (94aa)
Addiction module toxin, RelE/StbE family n=3 Tax=Sphingomonadaceae RepID=A5VG17_SPHWW
Addiction module antitoxin {ECO:0000313|EMBL:KKC24121.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
addiction module antitoxin
SCNpilot_expt_1000_bf_scaffold_768_26
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26263..26529)
DNA (267bp) protein (89aa)
RelB antitoxin n=2 Tax=Sphingobium RepID=D4Z8Q0_SPHJU
Translation repressor RelB {ECO:0000313|EMBL:KKC24120.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
relB; RelB antitoxin; K07473 DNA-damage-inducible protein J
SCNpilot_expt_1000_bf_scaffold_768_27
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26954..27589
DNA (636bp) protein (212aa)
UPI0003D5F36F related cluster n=1 Tax=unknown RepID=UPI0003D5F36F rbh
Transcription elongation protein SprT {ECO:0000313|EMBL:KKC24119.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
Hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_768_28
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27665..28318
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CL85_SPHYA rbh
ParA {ECO:0000313|EMBL:KKC24118.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
cobyrinic acid a,c-diamide synthase rbh
SCNpilot_expt_1000_bf_scaffold_768_29
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28315..28626
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D0V8_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:KKC24117.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_768_30
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28685..29794)
DNA (1110bp) protein (370aa)
UPI0003D64177 related cluster n=1 Tax=unknown RepID=UPI0003D64177 rbh
Plasmid replication initiator RepA {ECO:0000313|EMBL:AJR27102.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
RepA rbh
Displaying items 1-30 of 31 in total

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