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SCNpilot_expt_1000_bf_scaffold_841

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Displaying items 1-30 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_841_1

Not on your lists

comp(3..371)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AE43_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD59891.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_841_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1211..2119
DNA (909bp) protein (303aa)
Aminomethyltransferase GcvT {ECO:0000313|EMBL:EYR82120.1}; EC=2.1.2.10 {ECO:0000313|EMBL:EYR82120.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Aminomethyltransferase GcvT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D397_9RHIZ
FAD dependent oxidoreductase/aminomethyl transferase
SCNpilot_expt_1000_bf_scaffold_841_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2350..3588
DNA (1239bp) protein (413aa)
(2Fe-2S)-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI00037AD59D rbh
Putative dioxygenase, alpha-subunit {ECO:0000313|EMBL:AHK44977.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
Rieske (2Fe-2S) domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_841_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3647..3961
DNA (315bp) protein (105aa)
putative L-rhamnose 1-epimerase; K03534 L-rhamnose mutarotase [EC:5.1.3.-]
L-rhamnose mutarotase {ECO:0000255|HAMAP-Rule:MF_01663}; EC=5.1.3.32 {ECO:0000255|HAMAP-Rule:MF_01663};; Rhamnose 1-epimerase {ECO:0000255|HAMAP-Rule:MF_01663}; Type-3 mutarotase {ECO:0000255|HAMAP-Rule:MF_01663}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
L-rhamnose mutarotase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=RHAM_RHISN
SCNpilot_expt_1000_bf_scaffold_841_5
unknown

Not on your lists

4091..4306
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_841_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4309..4986)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S7U6_RHIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGS23471.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_841_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5080..6039)
DNA (960bp) protein (320aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|RuleBase:RU004155}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|RuleBase:RU004155};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Transaldolase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LQV7_RHITR
tal; transaldolase
SCNpilot_expt_1000_bf_scaffold_841_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6248..7249
DNA (1002bp) protein (334aa)
LacI family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00036CACA5 rbh
Transcriptional regulator with sigma factor-related N-terminal domain {ECO:0000313|EMBL:EJC68195.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
DeoR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_841_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7338..8210)
DNA (873bp) protein (291aa)
Methylated-DNA--protein-cysteine S-methyltransferase protein {ECO:0000313|EMBL:AJD42892.1}; EC=2.1.1.63 {ECO:0000313|EMBL:AJD42892.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
6-O-methylguanine-DNA methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] rbh
6-O-methylguanine-DNA methyltransferase n=1 Tax=Rhizobium mongolense RepID=UPI0003B2FCB0 rbh
SCNpilot_expt_1000_bf_scaffold_841_10
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8278..8775)
DNA (498bp) protein (166aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000360D617
Uncharacterized protein {ECO:0000313|EMBL:AJD42893.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_841_11
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8798..9577
DNA (780bp) protein (260aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000313|EMBL:CDN55481.1}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
endonuclease III; K10773 endonuclease III [EC:4.2.99.18] rbh
endonuclease III n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000364CD1B rbh
SCNpilot_expt_1000_bf_scaffold_841_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9542..10126)
DNA (585bp) protein (195aa)
TetR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00035C1EE3
TetR family transcriptional regulator {ECO:0000313|EMBL:AHF85746.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_841_13
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10210..10635
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T7X7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ27821.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
glyoxalase
SCNpilot_expt_1000_bf_scaffold_841_14
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10645..11361)
DNA (717bp) protein (239aa)
CysZ n=1 Tax=Rhizobium meliloti RepID=UPI0002D4D8AB rbh
CysZ-like protein rbh
Putative transmembrane protein {ECO:0000313|EMBL:CAC41594.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_841_15
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11598..12500
DNA (903bp) protein (301aa)
Transcriptional regulator, RpiR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LP81_RHITR
transcriptional regulator, RpiR family
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:AGB72521.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_841_16
unknown

Not on your lists

comp(12487..12807)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_841_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12918..14282)
DNA (1365bp) protein (455aa)
guaD; guanine deaminase; K01487 guanine deaminase [EC:3.5.4.3] rbh
Guanine deaminase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JJK8_AGRRK rbh
Guanine deaminase {ECO:0000313|EMBL:ACM30100.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_841_18
actinobacterium acAcidi, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14413..15747)
DNA (1335bp) protein (445aa)
SsnA; cytosine deaminase and related metal-dependent hydrolases; K12960 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00038123FA rbh
Uncharacterized protein {ECO:0000313|EMBL:KGA08426.1}; TaxID=1504320 species="Bacteria; Actinobacteria.;" source="actinobacterium acAcidi.;"
SCNpilot_expt_1000_bf_scaffold_841_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15750..16607)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2L4X7_9RHIZ rbh
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KEA09166.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_841_20
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16622..18022)
DNA (1401bp) protein (467aa)
Hydroxydechloroatrazine ethylaminohydrolase {ECO:0000313|EMBL:ESW94138.1}; EC=3.5.99.3 {ECO:0000313|EMBL:ESW94138.1};; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
amidohydrolase; K03382 hydroxyatrazine ethylaminohydrolase [EC:3.5.99.3] rbh
UPI0003CE9B51 related cluster n=1 Tax=unknown RepID=UPI0003CE9B51 rbh
SCNpilot_expt_1000_bf_scaffold_841_21
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18033..18968)
DNA (936bp) protein (312aa)
UPI0003CE5E4F related cluster n=1 Tax=unknown RepID=UPI0003CE5E4F rbh
Sugar ABC transporter {ECO:0000313|EMBL:ESW94139.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
sugar ABC transporter; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_841_22
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18981..20033)
DNA (1053bp) protein (351aa)
UPI0003CE49B6 related cluster n=1 Tax=unknown RepID=UPI0003CE49B6 rbh
Sugar ABC transporter {ECO:0000313|EMBL:ESW94140.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
sugar ABC transporter; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_841_23
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20036..21634)
DNA (1599bp) protein (533aa)
sugar ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
UPI0003CF3467 related cluster n=1 Tax=unknown RepID=UPI0003CF3467 rbh
ABC transporter {ECO:0000313|EMBL:ESW94141.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_841_24
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21667..22779)
DNA (1113bp) protein (371aa)
UPI0003CF8321 related cluster n=1 Tax=unknown RepID=UPI0003CF8321 rbh
Membrane protein {ECO:0000313|EMBL:ESW94142.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
basic membrane lipoprotein rbh
SCNpilot_expt_1000_bf_scaffold_841_25
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23524..24234
DNA (711bp) protein (237aa)
Rieske (2Fe-2S) domain-containing protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DHX8_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:KEA09160.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_841_26
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24231..24866
DNA (636bp) protein (212aa)
gstc; glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase n=1 Tax=Rhizobium sp. AP16 RepID=J2WHV3_9RHIZ rbh
Glutathione S-transferase {ECO:0000313|EMBL:KEA09159.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_841_27
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24884..26500
DNA (1617bp) protein (539aa)
adenine deaminase (EC:3.5.4.2); K01486 adenine deaminase [EC:3.5.4.2] rbh
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
adenine deaminase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036FF7E9 rbh
SCNpilot_expt_1000_bf_scaffold_841_28
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26454..26675
DNA (222bp) protein (74aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
adenine deaminase (EC:3.5.4.2); K01486 adenine deaminase [EC:3.5.4.2]
Adenine deaminase (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J2QAY2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_841_29
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26676..27608
DNA (933bp) protein (311aa)
Transcriptional regulator n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K104_AGRVS rbh
Transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:ACM38552.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_841_30
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27702..28202
DNA (501bp) protein (167aa)
Sulfopyruvate decarboxylase alpha subunit n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K105_AGRVS rbh
Sulfopyruvate decarboxylase alpha subunit rbh
Sulfopyruvate decarboxylase alpha subunit {ECO:0000313|EMBL:ACM38553.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
Displaying items 1-30 of 168 in total

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