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SCNpilot_expt_1000_bf_scaffold_2006

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2006_1
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..313)
DNA (312bp) protein (104aa)
Type IV secretion system protein VirD4 n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WGP8_DELAC
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:BAP44835.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
TRAG family protein; K03205 type IV secretion system protein VirD4
SCNpilot_expt_1000_bf_scaffold_2006_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(551..829)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Pseudomonas alcaliphila RepID=UPI00031D47B7
hypothetical protein
Putative lipoprotein {ECO:0000313|EMBL:AEB83967.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_2006_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(826..1770)
DNA (945bp) protein (315aa)
LysR-family transcriptional regulator TraR n=11 Tax=Pseudomonas aeruginosa RepID=M2ZS83_PSEAI
D-alanyl-D-alanine endopeptidase {ECO:0000313|EMBL:ETD48023.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2006_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2176..2952
DNA (777bp) protein (259aa)
UPI0003D3FE1B related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3FE1B rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO26439.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2006_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3212..4915
DNA (1704bp) protein (568aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp.
potassium-transporting ATPase subunit A (EC:3.6.3.12) rbh
Potassium-transporting ATPase A chain n=2 Tax=Alcaligenes RepID=M5J2F6_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_2006_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4925..5599
DNA (675bp) protein (225aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp.
potassium-transporting ATPase (EC:3.6.3.12); K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12]
Potassium-transporting ATPase C chain n=2 Tax=Alcaligenes RepID=M5IVM0_9BURK
SCNpilot_expt_1000_bf_scaffold_2006_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5614..7713
DNA (2100bp) protein (700aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp.
potassium-transporting ATPase subunit B (EC:3.6.3.4); K01547 K+-transporting ATPase ATPase B chain [EC:3.6.3.12] rbh
Potassium-transporting ATPase B chain n=2 Tax=Alcaligenes RepID=U1YIE8_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_2006_8
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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7797..10538
DNA (2742bp) protein (914aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
sensor protein KdpD; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] rbh
Sensor protein KdpD n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GSR2_THISH rbh
SCNpilot_expt_1000_bf_scaffold_2006_9
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10522..11256
DNA (735bp) protein (245aa)
Response regulator receiver protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GSR1_THISH rbh
response regulator receiver protein; K07667 two-component system, OmpR family, KDP operon response regulator KdpE rbh
Response regulator receiver protein {ECO:0000313|EMBL:ACL72965.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_1000_bf_scaffold_2006_10
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11285..12529)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA010 RepID=U9MGS4_PSEAI
PF11843 family protein {ECO:0000313|EMBL:KDD60163.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2006_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12490..12927)
DNA (438bp) protein (146aa)
Uncharacterized protein n=7 Tax=Pseudomonas aeruginosa RepID=M3B7P9_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX35354.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
Displaying 11 items

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