ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2044

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2044_1
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..439
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQJ4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK91201.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2044_2
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

439..1224
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingomonas sp. LH128 RepID=J8VK21_9SPHN rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EJU10965.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_2044_3
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1229..2419
DNA (1191bp) protein (397aa)
Sulfotransferase family protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZNU6_9SPHN rbh
Sulfotransferase {ECO:0000313|EMBL:KHK90583.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2044_4
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2416..3423
DNA (1008bp) protein (336aa)
Theronine dehydrogenase-like Zn-dependent dehydrogenase n=1 Tax=Novosphingobium sp. AP12 RepID=J2P223_9SPHN rbh
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:EJL21007.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
alcohol dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_2044_5
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3481..3876
DNA (396bp) protein (132aa)
carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
Carboxymuconolactone decarboxylase n=1 Tax=Burkholderia sp. H160 RepID=B5WG93_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KHK90581.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_2044_6
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3873..5042
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2FV15_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL21005.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2044_7
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5047..5832
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8L4D1_FRASN rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABW13299.1}; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
SCNpilot_expt_1000_bf_scaffold_2044_8
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5914..6774
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Frankia sp. BMG5.12 RepID=UPI00036BBC4A
Uncharacterized protein {ECO:0000313|EMBL:KHK90585.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
3-alpha-hydroxysteroid dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2044_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6790..7206
DNA (417bp) protein (139aa)
DNA-binding protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035D166C
Uncharacterized protein {ECO:0000313|EMBL:EKU74406.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
3-ketoacyl-CoA thiolase
SCNpilot_expt_1000_bf_scaffold_2044_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7209..8378
DNA (1170bp) protein (390aa)
diterpenoid dioxygenase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BE8A rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KEZ19716.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
acetyl-CoA acetyltransferase
SCNpilot_expt_1000_bf_scaffold_2044_11
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8772..9077
DNA (306bp) protein (102aa)
High-potential iron-sulfur protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MQF3_9SPHN
High-potential iron-sulfur protein {ECO:0000256|RuleBase:RU000620}; Short=HiPIP {ECO:0000256|RuleBase:RU000620};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
SCNpilot_expt_1000_bf_scaffold_2044_12
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9074..9613
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CMS8_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU73609.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_expt_1000_bf_scaffold_2044_13
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9773..10732)
DNA (960bp) protein (320aa)
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase (EC:1.2.1.45) rbh
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase {ECO:0000313|EMBL:CCA90873.1}; EC=1.2.1.45 {ECO:0000313|EMBL:CCA90873.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEZ8_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2044_14
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10763..11605)
DNA (843bp) protein (281aa)
protocatechuate 4,5-dioxygenase (EC:1.13.11.8); K04101 protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8] rbh
Protocatechuate 3,4-dioxygenase subunit beta n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HM02_9SPHN rbh
Protocatechuate 3,4-dioxygenase subunit beta {ECO:0000313|EMBL:EQB13213.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_expt_1000_bf_scaffold_2044_15
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12002..12949)
DNA (948bp) protein (316aa)
vanillate monooxygenase (EC:1.14.13.82); K03862 vanillate monooxygenase [EC:1.14.13.82] rbh
UPI0003D65BFC related cluster n=1 Tax=unknown RepID=UPI0003D65BFC rbh
Rieske (2Fe-2S) protein {ECO:0000313|EMBL:ETI58841.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
Displaying 15 items

View Taxonomy