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SCNpilot_expt_1000_bf_scaffold_2080

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2080_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1034)
DNA (1032bp) protein (344aa)
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:GAO54954.1}; EC=2.3.1.47 {ECO:0000313|EMBL:GAO54954.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
serine palmitoyltransferase (EC:2.3.1.50); K00639 glycine C-acetyltransferase [EC:2.3.1.29]
Glycine C-acetyltransferase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WDL1_9SPHN
SCNpilot_expt_1000_bf_scaffold_2080_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1167..1406)
DNA (240bp) protein (80aa)
phosphopantetheine-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5EA75
Phosphopantetheine-binding protein {ECO:0000313|EMBL:KHS48043.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2080_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1515..2117
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3M9_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54956.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2080_4
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2189..2851)
DNA (663bp) protein (221aa)
Two-component system, PleD family, response regulator DivK n=2 Tax=Novosphingobium RepID=F6IJL0_9SPHN
two-component system PleD family response regulator DivK; K11443 two-component system, cell cycle response regulator DivK
Two-component system PleD family response regulator DivK {ECO:0000313|EMBL:EIZ78276.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_expt_1000_bf_scaffold_2080_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2902..3534
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3N2_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO54959.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_expt_1000_bf_scaffold_2080_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3535..4002
DNA (468bp) protein (156aa)
Endoribonuclease L-PSP n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3N3_NOVAD
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ABD27540.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_2080_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3977..4747
DNA (771bp) protein (257aa)
Glycerophosphoryl diester phosphodiesterase family protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUQ6_9SPHN rbh
Glycerophosphoryl diester phosphodiesterase family protein {ECO:0000313|EMBL:GAD49114.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
glycerophosphoryl diester phosphodiesterase rbh
SCNpilot_expt_1000_bf_scaffold_2080_8
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4744..5886
DNA (1143bp) protein (381aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJK6_9SPHN rbh
hypothetical protein; K09919 hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCA94260.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_2080_9
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5883..6254)
DNA (372bp) protein (124aa)
Sel1 repeat-containing protein n=2 Tax=Novosphingobium RepID=F6IJK5_9SPHN
Sel1 repeat-containing protein; K07126
Sel1 repeat-containing protein {ECO:0000313|EMBL:EHJ61024.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_2080_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6529..6990
DNA (462bp) protein (154aa)
RNA polymerase-binding transcription factor DksA n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL68_9SPHN
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_2080_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7151..7540
DNA (390bp) protein (130aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium RepID=F6IJK3_9SPHN
Type IV pilus assembly PilZ {ECO:0000313|EMBL:KHS48052.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2080_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7589..9061
DNA (1473bp) protein (491aa)
Putative ABC transporter substrate-binding protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUQ8_9SPHN
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAD49119.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
extracellular solute-binding protein; K15580 oligopeptide transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2080_13
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9291..9986
DNA (696bp) protein (232aa)
DNA-binding response regulator CtrA n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N5V3_ERYLH rbh
DNA-binding response regulator CtrA; K13584 two-component system, cell cycle response regulator CtrA rbh
DNA-binding response regulator CtrA {ECO:0000313|EMBL:ABC64938.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_expt_1000_bf_scaffold_2080_14
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10278..10667)
DNA (390bp) protein (130aa)
MerR family transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B38A98
MerR family transcriptional regulator; K08365 MerR family transcriptional regulator, mercuric resistance operon regulatory protein
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_2080_15
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10759..11454
DNA (696bp) protein (232aa)
Membrane protein n=1 Tax=Sphingobium baderi LL03 RepID=T0I680_9SPHN
Membrane protein {ECO:0000313|EMBL:EQB05149.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2080_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11489..13183
DNA (1695bp) protein (565aa)
Copper-resistance protein CopA n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USH1_9SPHN rbh
Copper-binding protein {ECO:0000313|EMBL:AIT07934.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
CopA family copper resistance protein rbh
SCNpilot_expt_1000_bf_scaffold_2080_17
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13180..14130
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037A541C rbh
Copper resistance B {ECO:0000313|EMBL:KEZ16645.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
copper resistance B; K07233 copper resistance protein B
SCNpilot_expt_1000_bf_scaffold_2080_18
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14141..16078)
DNA (1938bp) protein (646aa)
glycosyl hydrolase family protein; K05349 beta-glucosidase [EC:3.2.1.21]
Glycoside hydrolase family 3 domain protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VK74_CAUST
Glycoside hydrolase family 3 domain protein {ECO:0000313|EMBL:ADG10897.1}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_1000_bf_scaffold_2080_19
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16263..16625)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GEQ5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA99151.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2080_20
unknown

Not on your lists

16857..17018
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2080_21
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17192..18043
DNA (852bp) protein (284aa)
Transcriptional regulator n=1 Tax=Sphingobium sp. AP49 RepID=J2WD03_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EJK80708.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2080_22
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18127..19050
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003799FD0 rbh
Putative ribonuclease protein {ECO:0000313|EMBL:EZP54596.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein; K07058 membrane protein
SCNpilot_expt_1000_bf_scaffold_2080_23
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19411..20805
DNA (1395bp) protein (465aa)
PREDICTED: uncharacterized protein LOC102335476 n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17379
Scaffold13, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31214.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
multi-sensor hybrid histidine kinase
SCNpilot_expt_1000_bf_scaffold_2080_24
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20802..21737
DNA (936bp) protein (312aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VMC7_CAUST
multi-sensor hybrid histidine kinase
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:ADG11650.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
Displaying 24 items

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