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SCNpilot_expt_1000_bf_scaffold_2237

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2237_1
unknown

Not on your lists

comp(3..104)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2237_2
unknown

Not on your lists

comp(101..214)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2237_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

836..1285
DNA (450bp) protein (150aa)
ATPase AAA n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B540FF
Fis family transcriptional regulator {ECO:0000313|EMBL:KHS43183.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
Fis family transcriptional regulator; K03974 psp operon transcriptional activator
SCNpilot_expt_1000_bf_scaffold_2237_4
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1430..2722
DNA (1293bp) protein (431aa)
amidohydrolase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BC08
Amidohydrolase {ECO:0000313|EMBL:KHK90914.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
putative amidohydrolase
SCNpilot_expt_1000_bf_scaffold_2237_5
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2724..3938
DNA (1215bp) protein (405aa)
Formyl-CoA transferase n=1 Tax=Frankia sp. CN3 RepID=G6HFB9_9ACTO rbh
L-carnitine dehydratase/bile acid-inducible protein F rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ADP80088.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_expt_1000_bf_scaffold_2237_6
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4216..5004)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2FXI5_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL21940.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_2237_7
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5487..6032
DNA (546bp) protein (182aa)
Regulatory protein MarR n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L6S8_9SPHN
Regulatory protein MarR {ECO:0000313|EMBL:EIZ80144.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
regulatory protein MarR
SCNpilot_expt_1000_bf_scaffold_2237_8
unknown

Not on your lists

6202..6396
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2237_9
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6543..7241
DNA (699bp) protein (233aa)
PilZ domain-containing protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GPB9_9SPHN
PilZ domain-containing protein {ECO:0000313|EMBL:EJL24618.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2237_10
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7328..8473
DNA (1146bp) protein (382aa)
Diguanylate cyclase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTB4_SPHAL
Diguanylate cyclase {ECO:0000313|EMBL:KGB51511.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
diguanylate cyclase; K13590 diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_2237_11
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8505..10082)
DNA (1578bp) protein (526aa)
Glucose-methanol-choline oxidoreductase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJF1_9SPHN rbh
glucose-methanol-choline oxidoreductase rbh
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:CCA91777.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_2237_12
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10190..10396)
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJF4_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA91780.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_2237_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10524..11360)
DNA (837bp) protein (279aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117); K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117] rbh
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YP23_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2237_14
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12095..12889)
DNA (795bp) protein (265aa)
Two-component response regulator n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCX3_9SPHN
Two-component response regulator {ECO:0000313|EMBL:EDL48453.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
two-component response regulator
SCNpilot_expt_1000_bf_scaffold_2237_15
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13460..14716)
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCF1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO88295.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
metal dependent phosphohydrolase rbh
SCNpilot_expt_1000_bf_scaffold_2237_16
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14851..15432)
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IK08_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA91826.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_2237_17

Not on your lists

16114..17217
DNA (1104bp) protein (368aa)
Putative fatty acid desaturase n=1 Tax=uncultured bacterium RepID=A3RGW8_9BACT rbh
Putative fatty acid desaturase {ECO:0000313|EMBL:ABN71553.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
fatty acid desaturase rbh
SCNpilot_expt_1000_bf_scaffold_2237_18

Not on your lists

comp(17214..18188)
DNA (975bp) protein (325aa)
Putative esterase n=1 Tax=uncultured bacterium RepID=A3RGW9_9BACT rbh
Putative esterase {ECO:0000313|EMBL:ABN71554.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
esterase/lipase/thioesterase rbh
SCNpilot_expt_1000_bf_scaffold_2237_19

Not on your lists

comp(18212..19309)
DNA (1098bp) protein (366aa)
Putative permease n=1 Tax=uncultured bacterium RepID=A3RGX0_9BACT rbh
Putative permease {ECO:0000313|EMBL:ABN71555.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
lipopolysaccharide export system permease; K11720 lipopolysaccharide export system permease protein
SCNpilot_expt_1000_bf_scaffold_2237_20

Not on your lists

comp(19306..20514)
DNA (1209bp) protein (403aa)
Putative permease n=1 Tax=uncultured bacterium RepID=A3RGX1_9BACT rbh
Putative permease {ECO:0000313|EMBL:ABN71556.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
permease YjgP/YjgQ rbh
SCNpilot_expt_1000_bf_scaffold_2237_21
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20622..21017)
DNA (396bp) protein (132aa)
UPI0003D6669D related cluster n=1 Tax=unknown RepID=UPI0003D6669D
Membrane protein {ECO:0000313|EMBL:KHK92516.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2237_22
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21089..21493)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0JCE6_9SPHN
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
ATP-dependent Clp protease adaptor protein ClpS; K06891 ATP-dependent Clp protease adaptor protein ClpS
SCNpilot_expt_1000_bf_scaffold_2237_23

Not on your lists

comp(21664..22536)
DNA (873bp) protein (291aa)
Putative phasin n=1 Tax=uncultured bacterium RepID=A3RGX3_9BACT rbh
Putative phasin {ECO:0000313|EMBL:ABN71558.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phasin
SCNpilot_expt_1000_bf_scaffold_2237_24

Not on your lists

comp(22590..24437)
DNA (1848bp) protein (616aa)
poly-3-hydroxybutyrate synthase; K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
Polyhydroxyalkanoate synthase n=1 Tax=uncultured bacterium RepID=A3RGX4_9BACT
Polyhydroxyalkanoate synthase {ECO:0000313|EMBL:ABN71559.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_2237_25
unknown

Not on your lists

comp(24515..25006)
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2237_26
bacterium YEK0313, Bacteria

Not on your lists

25035..25691
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037E2520
Uncharacterized protein {ECO:0000313|EMBL:CEJ13825.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2237_27

Not on your lists

25736..26935
DNA (1200bp) protein (400aa)
aminotransferase (EC:2.6.1.-); K14261 alanine-synthesizing transaminase [EC:2.6.1.-]
Putative aspartate/tyrosine/aromatic aminotransferase n=1 Tax=uncultured bacterium RepID=A3RGX5_9BACT rbh
Putative aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:ABN71560.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_2237_28

Not on your lists

27047..27859
DNA (813bp) protein (271aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Putative enoyl-CoA hydratase n=1 Tax=uncultured bacterium RepID=A3RGX8_9BACT rbh
Putative enoyl-CoA hydratase {ECO:0000313|EMBL:ABN71563.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_2237_29
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27870..29054)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CNY1_SPHYA rbh
Scaffold26, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30396.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
Rieske (2Fe-2S) iron-sulfur domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_2237_30

Not on your lists

comp(29279..29806)
DNA (528bp) protein (176aa)
molybdenum cofactor guanylyltransferase; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Putative molybdopterin-guanine dinucleotide biosynthesis protein n=1 Tax=uncultured bacterium RepID=A3RGX9_9BACT
Putative molybdopterin-guanine dinucleotide biosynthesis protein {ECO:0000313|EMBL:ABN71564.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 33 in total

View Taxonomy