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SCNpilot_expt_1000_bf_scaffold_2264

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2264_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..150)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2PM28_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL28552.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2264_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

305..1276
DNA (972bp) protein (324aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16] rbh
2-nitropropane dioxygenase, NPD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G617_NOVAD rbh
2-nitropropane dioxygenase {ECO:0000313|EMBL:KHS49151.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_expt_1000_bf_scaffold_2264_3
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1299..1886)
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6U8_9SPHN
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32062.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2264_4
unknown

Not on your lists

2078..2302
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2264_5
unknown

Not on your lists

2318..2650
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2264_6
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3177..4970
DNA (1794bp) protein (598aa)
single-stranded-DNA-specific exonuclease (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] rbh
Single-stranded-DNA-specific exonuclease n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6U9_9SPHN rbh
Single-stranded-DNA-specific exonuclease {ECO:0000313|EMBL:EHJ62995.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_2264_7
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5438..6064
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GHS0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB00242.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2264_8
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6071..7207)
DNA (1137bp) protein (379aa)
D-isomer specific 2-hydroxyacid dehydrogenase; K03778 D-lactate dehydrogenase [EC:1.1.1.28]
D-lactate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F58B07
Lactate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EJK79173.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
SCNpilot_expt_1000_bf_scaffold_2264_9
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7355..8524)
DNA (1170bp) protein (390aa)
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_2264_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8677..9717
DNA (1041bp) protein (347aa)
phosphate ABC transporter substrate-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B74A67 rbh
phosphate binding protein; K02040 phosphate transport system substrate-binding protein rbh
Phosphate ABC transporter substrate-binding protein, PhoT family {ECO:0000313|EMBL:ABD26713.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_2264_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9752..11134
DNA (1383bp) protein (461aa)
Phosphate ABC transporter membrane protein 1, PhoT family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G609_NOVAD rbh
Phosphate ABC transporter permease {ECO:0000313|EMBL:KHS49159.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
phosphate ABC transporter permease; K02037 phosphate transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2264_12
unknown

Not on your lists

comp(11183..11332)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2264_13
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11743..12381
DNA (639bp) protein (213aa)
Phosphate ABC transporter permease protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y2Y3_9SPHN
Phosphate ABC transporter permease protein {ECO:0000313|EMBL:GAD47296.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
phosphate ABC transporter permease; K02038 phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2264_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12378..13157
DNA (780bp) protein (260aa)
Phosphate import ATP-binding protein PstB {ECO:0000313|EMBL:AKH41442.1}; EC=3.6.3.27 {ECO:0000313|EMBL:AKH41442.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
phosphate transporter ATP-binding protein; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] rbh
Phosphate import ATP-binding protein PstB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PSTB_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_2264_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13167..13850
DNA (684bp) protein (228aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z975_9SPHN rbh
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
phosphate uptake regulator PhoU; K02039 phosphate transport system protein rbh
SCNpilot_expt_1000_bf_scaffold_2264_16
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13850..14539
DNA (690bp) protein (230aa)
chemotaxis protein CheY n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E94974
Chemotaxis protein CheY {ECO:0000313|EMBL:KEO87051.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
SCNpilot_expt_1000_bf_scaffold_2264_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14536..15168)
DNA (633bp) protein (211aa)
uracil-DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HG02_9SPHN
Uracil-DNA glycosylase {ECO:0000313|EMBL:KHS48993.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_expt_1000_bf_scaffold_2264_18
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15249..16241)
DNA (993bp) protein (331aa)
Oxidoreductase, aldolase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IWP0_RHOCS
oxidoreductase, aldolase
Oxidoreductase, aldolase {ECO:0000313|EMBL:ACJ00714.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_2264_19
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16273..16869)
DNA (597bp) protein (199aa)
Recombination protein RecR n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZS03_9SPHN
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
recombination protein RecR; K06187 recombination protein RecR
SCNpilot_expt_1000_bf_scaffold_2264_20
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16910..17785
DNA (876bp) protein (292aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
Methionyl-tRNA formyltransferase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IW95_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2264_21
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17844..18590
DNA (747bp) protein (249aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] rbh
tRNA pseudouridine synthase A n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EIB1_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2264_22
Austwickia chelonae, Austwickia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18592..19467
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Austwickia chelonae NBRC 105200 RepID=K6WC76_9MICO
FkbM family methyltransferase
Uncharacterized protein {ECO:0000313|EMBL:GAB79452.1}; TaxID=1184607 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Austwickia.;" source="Austwickia chelonae NBRC 105200.;"
SCNpilot_expt_1000_bf_scaffold_2264_23
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19487..20479)
DNA (993bp) protein (331aa)
cobaltochelatase CobS (EC:6.6.1.2); K09882 cobaltochelatase CobS [EC:6.6.1.2]
Cobaltochelatase CobS n=2 Tax=Novosphingobium RepID=F6IFV8_9SPHN
Cobalamin biosynthesis protein CobS {ECO:0000313|EMBL:KHK91446.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_2264_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20534..21235)
DNA (702bp) protein (234aa)
Putative HxlR family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZS08_9SPHN
Putative HxlR family transcriptional regulator {ECO:0000313|EMBL:GAD48159.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
HxlR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2264_25
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21311..21742
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIJ3_9SPHN
Scaffold3, whole genome shotgun sequence {ECO:0000313|EMBL:KIS33287.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
glyoxalase
SCNpilot_expt_1000_bf_scaffold_2264_26
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21789..22469
DNA (681bp) protein (227aa)
glutathione S-transferase-like protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IQ68_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK91448.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_2264_27
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22495..23262
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A059_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD48163.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2264_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23265..24056
DNA (792bp) protein (264aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=2 Tax=Novosphingobium RepID=F6IFW2_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO56718.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
bleomycin resistance protein; K06996 rbh
SCNpilot_expt_1000_bf_scaffold_2264_29
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24057..24686
DNA (630bp) protein (210aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase-like n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFW3_9SPHN rbh
Glutathione S-transferase-like {ECO:0000313|EMBL:CCA93621.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_2264_30
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24683..25168
DNA (486bp) protein (162aa)
3-demethylubiquinone-9 3-methyltransferase; K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBJ8_GEOUR
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:GAM98027.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Displaying items 1-30 of 35 in total

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