name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_2264_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..150)
|
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2PM28_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL28552.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2264_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
305..1276
|
2-nitropropane dioxygenase, NPD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G617_NOVAD
rbh
2-nitropropane dioxygenase {ECO:0000313|EMBL:KHS49151.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2264_3
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1299..1886)
|
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6U8_9SPHN
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32062.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2264_4
unknown
|
Not on your lists |
2078..2302
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2264_5
unknown
|
Not on your lists |
2318..2650
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2264_6
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3177..4970
|
single-stranded-DNA-specific exonuclease (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
rbh
Single-stranded-DNA-specific exonuclease n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6U9_9SPHN
rbh
Single-stranded-DNA-specific exonuclease {ECO:0000313|EMBL:EHJ62995.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2264_7
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5438..6064
|
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GHS0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB00242.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2264_8
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6071..7207)
|
D-isomer specific 2-hydroxyacid dehydrogenase; K03778 D-lactate dehydrogenase [EC:1.1.1.28]
D-lactate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F58B07
Lactate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EJK79173.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2264_9
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7355..8524)
|
Tax=GWF1_Sphingomonadales_63_6_curated
|
|
SCNpilot_expt_1000_bf_scaffold_2264_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8677..9717
|
phosphate ABC transporter substrate-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B74A67
rbh
phosphate binding protein; K02040 phosphate transport system substrate-binding protein
rbh
Phosphate ABC transporter substrate-binding protein, PhoT family {ECO:0000313|EMBL:ABD26713.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
|
|
SCNpilot_expt_1000_bf_scaffold_2264_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9752..11134
|
Phosphate ABC transporter membrane protein 1, PhoT family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G609_NOVAD
rbh
Phosphate ABC transporter permease {ECO:0000313|EMBL:KHS49159.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
phosphate ABC transporter permease; K02037 phosphate transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2264_12
unknown
|
Not on your lists |
comp(11183..11332)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2264_13
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11743..12381
|
Phosphate ABC transporter permease protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y2Y3_9SPHN
Phosphate ABC transporter permease protein {ECO:0000313|EMBL:GAD47296.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
phosphate ABC transporter permease; K02038 phosphate transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_2264_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12378..13157
|
Phosphate import ATP-binding protein PstB {ECO:0000313|EMBL:AKH41442.1}; EC=3.6.3.27 {ECO:0000313|EMBL:AKH41442.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
phosphate transporter ATP-binding protein; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
rbh
Phosphate import ATP-binding protein PstB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PSTB_NOVAD
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2264_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13167..13850
|
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z975_9SPHN
rbh
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
phosphate uptake regulator PhoU; K02039 phosphate transport system protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2264_16
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13850..14539
|
chemotaxis protein CheY n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E94974
Chemotaxis protein CheY {ECO:0000313|EMBL:KEO87051.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
|
|
SCNpilot_expt_1000_bf_scaffold_2264_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14536..15168)
|
uracil-DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HG02_9SPHN
Uracil-DNA glycosylase {ECO:0000313|EMBL:KHS48993.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2264_18
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15249..16241)
|
Oxidoreductase, aldolase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IWP0_RHOCS
oxidoreductase, aldolase
Oxidoreductase, aldolase {ECO:0000313|EMBL:ACJ00714.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
|
|
SCNpilot_expt_1000_bf_scaffold_2264_19
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16273..16869)
|
Recombination protein RecR n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZS03_9SPHN
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
recombination protein RecR; K06187 recombination protein RecR
|
|
SCNpilot_expt_1000_bf_scaffold_2264_20
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16910..17785
|
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
Methionyl-tRNA formyltransferase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IW95_9SPHN
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2264_21
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17844..18590
|
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
rbh
tRNA pseudouridine synthase A n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EIB1_9SPHN
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2264_22
Austwickia chelonae, Austwickia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
18592..19467
|
Uncharacterized protein n=1 Tax=Austwickia chelonae NBRC 105200 RepID=K6WC76_9MICO
FkbM family methyltransferase
Uncharacterized protein {ECO:0000313|EMBL:GAB79452.1}; TaxID=1184607 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Austwickia.;" source="Austwickia chelonae NBRC 105200.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2264_23
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19487..20479)
|
Cobaltochelatase CobS n=2 Tax=Novosphingobium RepID=F6IFV8_9SPHN
Cobalamin biosynthesis protein CobS {ECO:0000313|EMBL:KHK91446.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2264_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20534..21235)
|
Putative HxlR family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZS08_9SPHN
Putative HxlR family transcriptional regulator {ECO:0000313|EMBL:GAD48159.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
HxlR family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_2264_25
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21311..21742
|
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIJ3_9SPHN
Scaffold3, whole genome shotgun sequence {ECO:0000313|EMBL:KIS33287.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
glyoxalase
|
|
SCNpilot_expt_1000_bf_scaffold_2264_26
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21789..22469
|
glutathione S-transferase-like protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IQ68_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK91448.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2264_27
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22495..23262
|
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A059_9SPHN
rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD48163.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2264_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23265..24056
|
Glyoxalase/bleomycin resistance protein/dioxygenase n=2 Tax=Novosphingobium RepID=F6IFW2_9SPHN
rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO56718.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
bleomycin resistance protein; K06996
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2264_29
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24057..24686
|
Glutathione S-transferase-like n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFW3_9SPHN
rbh
Glutathione S-transferase-like {ECO:0000313|EMBL:CCA93621.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2264_30
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24683..25168
|
3-demethylubiquinone-9 3-methyltransferase; K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBJ8_GEOUR
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:GAM98027.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
|