ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2322

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2322_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1026
DNA (1026bp) protein (342aa)
DEAD/DEAH box helicase-like n=2 Tax=Novosphingobium RepID=F6IGU9_9SPHN
ATP-dependent RNA helicase atu1833 {ECO:0000313|EMBL:GAO56237.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DEAD/DEAH box helicase
SCNpilot_expt_1000_bf_scaffold_2322_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1296..2240
DNA (945bp) protein (315aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
isocitrate dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B61EA6
SCNpilot_expt_1000_bf_scaffold_2322_3
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

2354..3598
DNA (1245bp) protein (415aa)
Putative esterase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022Q3_SOLUE rbh
esterase rbh
Putative esterase {ECO:0000313|EMBL:ABJ84047.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_1000_bf_scaffold_2322_4
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3678..5447
DNA (1770bp) protein (590aa)
Glutathione-regulated potassium-efflux system protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EHM4_9SPHN rbh
Glutathione-regulated potassium-efflux system protein {ECO:0000313|EMBL:EHJ59184.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
glutathione-regulated potassium-efflux system protein; K03455 monovalent cation:H+ antiporter-2, CPA2 family rbh
SCNpilot_expt_1000_bf_scaffold_2322_5
Mycobacterium intracellulare, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5470..6300)
DNA (831bp) protein (277aa)
Xylose isomerase domain-containing protein n=1 Tax=Mycobacterium sp. H4Y RepID=L8KPA7_9MYCO
xylose isomerase domain-containing protein
Xylose isomerase-like TIM barrel family protein {ECO:0000313|EMBL:EUA59697.1}; TaxID=1299331 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium intracellulare 1956.;"
SCNpilot_expt_1000_bf_scaffold_2322_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8213..10867)
DNA (2655bp) protein (885aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] rbh
Alanine--tRNA ligase n=1 Tax=Sphingomonas sp. LH128 RepID=J8SEU2_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2322_7
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10918..11856)
DNA (939bp) protein (313aa)
Sphingosine kinase/eukaryotic diacylglycerol kinase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FQZ8_9BURK
Diacylglycerol kinase catalytic domain protein {ECO:0000313|EMBL:AID31776.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein; K07029
SCNpilot_expt_1000_bf_scaffold_2322_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11985..14084
DNA (2100bp) protein (700aa)
Translation elongation factor 2 (EF-2/EF-G) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8V2_NOVAD rbh
fusA; elongation factor G; K02355 elongation factor G rbh
Translation elongation factor 2 (EF-2/EF-G) {ECO:0000313|EMBL:ABD25721.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_2322_9
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14217..15356
DNA (1140bp) protein (380aa)
Secretory lipase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VPL7_9SPHN rbh
Secretory lipase {ECO:0000313|EMBL:EJU12560.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
secretory lipase
SCNpilot_expt_1000_bf_scaffold_2322_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15499..16254
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037A85EB rbh
Uncharacterized protein {ECO:0000313|EMBL:AHG92302.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2322_11
unknown

Not on your lists

comp(16291..16524)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2322_12
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16559..17083)
DNA (525bp) protein (175aa)
Protein RecA n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N9K3_ERYLH
recA; recombinase A; K03553 recombination protein RecA
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_1000_bf_scaffold_2322_13
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17673..19004)
DNA (1332bp) protein (444aa)
octaprenyl-diphosphate synthase (EC:2.5.1.-); K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Octaprenyl-diphosphate synthase n=2 Tax=Novosphingobium RepID=F6INH2_9SPHN
Farnesyltranstransferase {ECO:0000313|EMBL:KHK92032.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_2322_14
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19070..19405
DNA (336bp) protein (112aa)
chorismate mutase (EC:5.4.99.5); K04092 chorismate mutase [EC:5.4.99.5]
Chorismate mutase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L6A4_9SPHN
Chorismate mutase {ECO:0000313|EMBL:EIZ79954.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_expt_1000_bf_scaffold_2322_15
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19420..19917
DNA (498bp) protein (166aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Endoribonuclease YbeY n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HHM6_9SPHN
metal-dependent hydrolase; K07042 probable rRNA maturation factor
SCNpilot_expt_1000_bf_scaffold_2322_16
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19933..20838
DNA (906bp) protein (302aa)
CBS domain-containing protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2P2G1_9SPHN rbh
CBS domain-containing protein {ECO:0000313|EMBL:EJL21137.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2322_17
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20899..21738
DNA (840bp) protein (280aa)
Transcriptional regulator n=1 Tax=Novosphingobium sp. AP12 RepID=J2GF82_9SPHN rbh
Transcriptional regulator {ECO:0000313|EMBL:EZP81776.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2322_18
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21943..22395)
DNA (453bp) protein (151aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Novosphingobium RepID=F6II42_9SPHN
cyclophilin type peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_1000_bf_scaffold_2322_19
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22518..23954
DNA (1437bp) protein (479aa)
Magnesium transporter n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9R3_NOVAD rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
magnesium transporter; K06213 magnesium transporter rbh
SCNpilot_expt_1000_bf_scaffold_2322_20
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23960..24352
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium RepID=F6II40_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ60794.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_2322_21
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24354..25109)
DNA (756bp) protein (252aa)
AraC family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6D900
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABZ73578.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_2322_22
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25106..25480)
DNA (375bp) protein (125aa)
glyoxalase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6B705
glyoxalase/bleomycin resistance protein/dioxygenase; K06996
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_1000_bf_scaffold_2322_23
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25567..25974)
DNA (408bp) protein (136aa)
NAD+ diphosphatase (EC:3.6.1.22); K03426 NAD+ diphosphatase [EC:3.6.1.22]
NAD+ diphosphatase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C4Z4_9SPHN
Zn-finger containing NTP pyrophosphohydrolase {ECO:0000313|EMBL:EJL21132.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_2322_24
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26407..27327)
DNA (921bp) protein (307aa)
UPI0003CFCD84 related cluster n=1 Tax=unknown RepID=UPI0003CFCD84
twin-arginine translocation pathway signal protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
Displaying 24 items

View Taxonomy