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SCNpilot_expt_1000_bf_scaffold_2342

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2342_1
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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833..1507
DNA (675bp) protein (225aa)
17 kDa surface antigen family protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C3J8_9SPHN rbh
17 kDa surface antigen family protein {ECO:0000313|EMBL:EIZ78035.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
17 kDa surface antigen
SCNpilot_expt_1000_bf_scaffold_2342_2
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1568..3178
DNA (1611bp) protein (537aa)
oxidoreductase alpha (molybdopterin) subunit (EC:1.7.99.4)
Molybdopterin dinucleotide binding domain protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QL21_9CAUL
Molybdopterin dinucleotide binding domain protein {ECO:0000313|EMBL:EGF92244.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
SCNpilot_expt_1000_bf_scaffold_2342_3
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3124..3717
DNA (594bp) protein (198aa)
oxidoreductase alpha (molybdopterin) subunit (EC:1.7.99.4)
Histidine kinase n=1 Tax=Asticcacaulis sp. AC460 RepID=V4Q4J4_9CAUL
Histidine kinase {ECO:0000313|EMBL:KJV09923.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
SCNpilot_expt_1000_bf_scaffold_2342_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3907..4311
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5DE09
Uncharacterized protein {ECO:0000313|EMBL:GAO53984.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2342_5
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4405..5823
DNA (1419bp) protein (473aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33 4.2.1.35); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase large subunit n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EEH5_9SPHN
SCNpilot_expt_1000_bf_scaffold_2342_6
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5925..6416
DNA (492bp) protein (164aa)
Uracil-DNA glycosylase superfamily n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VDD8_SPHWW
uracil-DNA glycosylase superfamily protein
Uracil-DNA glycosylase superfamily {ECO:0000313|EMBL:ABQ70304.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_2342_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6456..6629
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAT1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS43205.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_expt_1000_bf_scaffold_2342_8
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6629..7231
DNA (603bp) protein (201aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit (EC:4.2.1.33 4.2.1.35); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase small subunit n=1 Tax=Novosphingobium sp. AP12 RepID=J2P5Y8_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2342_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7300..7623
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5B6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53918.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2342_10
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7623..7856
DNA (234bp) protein (78aa)
BolA-like protein n=2 Tax=Novosphingobium RepID=F6IKS6_9SPHN
ATP-binding protein {ECO:0000313|EMBL:KHK92610.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
BolA-like protein
SCNpilot_expt_1000_bf_scaffold_2342_11
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7895..8221
DNA (327bp) protein (109aa)
Glutaredoxin n=1 Tax=Sphingomonas sp. LH128 RepID=J8VSR1_9SPHN
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
glutaredoxin-like protein; K07390 monothiol glutaredoxin
SCNpilot_expt_1000_bf_scaffold_2342_12
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8626..9399
DNA (774bp) protein (258aa)
NUDIX hydrolase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VCB8_9SPHN rbh
Scaffold3, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32976.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_2342_13
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9386..10630)
DNA (1245bp) protein (415aa)
Major facilitator superfamily protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VQZ2_9SPHN rbh
Arabinose ABC transporter permease {ECO:0000313|EMBL:KHK92749.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_2342_14
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10815..11696
DNA (882bp) protein (294aa)
Metallophosphoesterase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJ23_9SPHN rbh
metallophosphoesterase rbh
Metallophosphoesterase {ECO:0000313|EMBL:CCA91649.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_2342_15
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11693..12772
DNA (1080bp) protein (360aa)
Glycosyl transferase, group 1 n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EA16_9SPHN rbh
Glycosyl transferase, group 1 {ECO:0000313|EMBL:EHJ61873.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
group 1 glycosyl transferase rbh
SCNpilot_expt_1000_bf_scaffold_2342_16
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12827..13012)
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=J1IJ51_9PSED
Uncharacterized protein {ECO:0000313|EMBL:ESW53532.1}; TaxID=463794 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens BBc6R8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2342_17
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13009..14142)
DNA (1134bp) protein (378aa)
PepSY-associated TM helix domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUU6_PARL1 rbh
PepSY-associated TM helix domain-containing protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_1000_bf_scaffold_2342_18
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14177..16066)
DNA (1890bp) protein (630aa)
Outer membrane receptor (OMR) family protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VY52_9SPHN rbh
Outer membrane receptor (OMR) family protein {ECO:0000313|EMBL:EJU12336.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
outer membrane receptor (OMR) family protein rbh
SCNpilot_expt_1000_bf_scaffold_2342_19
unknown

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comp(16144..16326)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2342_20
unknown

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16453..16584
DNA (132bp) protein (44aa)

This feature has no annotations

Displaying 20 items

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