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SCNpilot_expt_1000_bf_scaffold_2398

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2398_1
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(206..967)
DNA (762bp) protein (254aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
primosome assembly protein PriA; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
Primosome assembly protein PriA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8N7_9SPHN
SCNpilot_expt_1000_bf_scaffold_2398_2
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

1394..2374
DNA (981bp) protein (327aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY13676.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_expt_1000_bf_scaffold_2398_3
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2406..3086
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2PN71_9SPHN
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32210.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2398_4
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3151..3801
DNA (651bp) protein (217aa)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
transaldolase (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2] rbh
Probable transaldolase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZZ2_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2398_5
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3934..5400
DNA (1467bp) protein (489aa)
cobaltochelatase CobT (EC:6.6.1.2); K09883 cobaltochelatase CobT [EC:6.6.1.2]
Cobaltochelatase CobT {ECO:0000313|EMBL:CCA93555.1}; EC=6.6.1.2 {ECO:0000313|EMBL:CCA93555.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Cobaltochelatase CobT n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IQ53_9SPHN
SCNpilot_expt_1000_bf_scaffold_2398_6
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5400..5744
DNA (345bp) protein (115aa)
cobaltochelatase CobT (EC:6.6.1.2); K09883 cobaltochelatase CobT [EC:6.6.1.2]
Cobaltochelatase CobT n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IQ53_9SPHN
Cobalt chelatase {ECO:0000313|EMBL:KHK91645.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_2398_7
unknown

Not on your lists

5840..6121
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2398_8
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6114..6782)
DNA (669bp) protein (223aa)
PREDICTED: uncharacterized protein LOC102340401 n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17E25
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_expt_1000_bf_scaffold_2398_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6998..7654
DNA (657bp) protein (219aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8P1_9SPHN
SCNpilot_expt_1000_bf_scaffold_2398_10
unknown

Not on your lists

7753..8265
DNA (513bp) protein (171aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2398_11
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8262..9206
DNA (945bp) protein (315aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GWA2_SPHAL rbh
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein {ECO:0000313|EMBL:KGB54428.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
D-isomer specific 2-hydroxyacid dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_2398_12
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9835..10569)
DNA (735bp) protein (245aa)
monofunctional biosynthetic peptidoglycan transglycosylase (EC:2.4.1.-); K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-] rbh
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|SAAS:SAAS00055690}; EC=2.4.-.- {ECO:0000256|SAAS:SAAS00279069};; EC=2.4.2.- {ECO:0000256|SAAS:SAAS00055699};; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E8M9_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2398_13
unknown

Not on your lists

11267..11566
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2398_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11580..13196
DNA (1617bp) protein (539aa)
Putative transporter n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLU5_9SPHN rbh
Putative transporter {ECO:0000313|EMBL:GAD49377.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
putative potassium-efflux system protein; K03455 monovalent cation:H+ antiporter-2, CPA2 family
SCNpilot_expt_1000_bf_scaffold_2398_15
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13248..14039)
DNA (792bp) protein (264aa)
RNA polymerase sigma factor RpoH n=1 Tax=Sphingomonas sp. LH128 RepID=J8VUL0_9SPHN
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
RNA polymerase sigma-32 factor; K03089 RNA polymerase sigma-32 factor
SCNpilot_expt_1000_bf_scaffold_2398_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14222..15199)
DNA (978bp) protein (326aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] rbh
Pseudouridine synthase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HKC7_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2398_17
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15235..15627
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HMQ3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB13463.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
PAD1/JAB1 superfamily metal-dependent protease
SCNpilot_expt_1000_bf_scaffold_2398_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15666..16319
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMV0_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO55308.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein; K13588 histidine phosphotransferase ChpT rbh
SCNpilot_expt_1000_bf_scaffold_2398_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16335..16664
DNA (330bp) protein (110aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:GAO55307.1}; EC=3.5.1.28 {ECO:0000313|EMBL:GAO55307.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
negative regulator of AmpC, AmpD; K01447 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
Negative regulator of AmpC, AmpD n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7J5_9SPHN
SCNpilot_expt_1000_bf_scaffold_2398_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16618..16995
DNA (378bp) protein (126aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:GAO55307.1}; EC=3.5.1.28 {ECO:0000313|EMBL:GAO55307.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
negative regulator of AmpC, AmpD; K01447 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
Negative regulator of AmpC, AmpD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3T7_NOVAD
SCNpilot_expt_1000_bf_scaffold_2398_21
unknown

Not on your lists

17471..17791
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2398_22
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17849..19162)
DNA (1314bp) protein (438aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] rbh
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:ABD27690.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ABD27690.1};; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
UDP-glucose 6-dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G383_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_2398_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19159..19902)
DNA (744bp) protein (248aa)
Serine/threonine-protein phosphatase 1 {ECO:0000313|EMBL:AKH42513.1}; EC=3.1.3.16 {ECO:0000313|EMBL:AKH42513.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
metallophosphoesterase; K07313 serine/threonine protein phosphatase 1 [EC:3.1.3.16]
Metallophosphoesterase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7I6_9SPHN
SCNpilot_expt_1000_bf_scaffold_2398_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20189..20968
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7I5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55364.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2398_25
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21075..21506
DNA (432bp) protein (144aa)
glyoxalase/bleomycin resistance protein/dioxygenase; K01759 lactoylglutathione lyase [EC:4.4.1.5]
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VNP7_9SPHN
Glyoxalase {ECO:0000313|EMBL:KHK93012.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_2398_26
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21612..22304
DNA (693bp) protein (231aa)
short-chain dehydrogenase n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B2F4E3
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADJ27392.1}; TaxID=105559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
SCNpilot_expt_1000_bf_scaffold_2398_27
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22306..23151)
DNA (846bp) protein (282aa)
Na(+)/H(+) antiporter NhaA n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMV6_9SPHN
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Na+/H+ antiporter NhaA; K03313 Na+:H+ antiporter, NhaA family
SCNpilot_expt_1000_bf_scaffold_2398_28
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23560..24954
DNA (1395bp) protein (465aa)
Bacteriophage N4 adsorption protein B n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMV7_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK93617.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
bacteriophage N4 adsorption protein B; K11740 bacteriophage N4 adsorption protein B rbh
SCNpilot_expt_1000_bf_scaffold_2398_29
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25350..26057
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3S6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49398.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2398_30
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26109..26981
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SNH2_9SPHN
Permease {ECO:0000313|EMBL:EZP83704.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein; K07090
Displaying items 1-30 of 71 in total

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