ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2403

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2403_1
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(421..1137)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VED0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EJZ17286.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2403_2
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1715..2947)
DNA (1233bp) protein (411aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EA88_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK98001.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
Xaa-Pro aminopeptidase-like
SCNpilot_expt_1000_bf_scaffold_2403_3
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3002..3424)
DNA (423bp) protein (141aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J7G5_FRASU
xylose isomerase
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:ADP79574.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_expt_1000_bf_scaffold_2403_4
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4012..5454)
DNA (1443bp) protein (481aa)
FAD linked oxidase domain protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J6E6_FRASU rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK98002.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
FAD linked oxidase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_2403_5
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5465..6505)
DNA (1041bp) protein (347aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EA86_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EHJ61801.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
xylose isomerase
SCNpilot_expt_1000_bf_scaffold_2403_6
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6502..7317)
DNA (816bp) protein (272aa)
ABC transporter related protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EA85_9SPHN
Peptide ABC transporter ATPase {ECO:0000313|EMBL:KHK98003.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_2403_7
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7310..8191)
DNA (882bp) protein (294aa)
ABC transporter related protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J7G9_FRASU rbh
ABC transporter rbh
ABC transporter related protein {ECO:0000313|EMBL:ADP79578.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_expt_1000_bf_scaffold_2403_8
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8188..9072)
DNA (885bp) protein (295aa)
nickel ABC transporter permease n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B35BED rbh
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADP79577.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_expt_1000_bf_scaffold_2403_9
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9069..10088)
DNA (1020bp) protein (340aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J7G7_FRASU rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK98004.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2403_10
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10141..11703)
DNA (1563bp) protein (521aa)
Extracellular solute-binding protein family 5 n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J7G6_FRASU rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK98005.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2403_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11909..12589)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A525_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KFC73882.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
flavin reductase
SCNpilot_expt_1000_bf_scaffold_2403_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12932..13639
DNA (708bp) protein (236aa)
Transcriptional regulator, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVU5_9RHIZ rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EYR81652.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2403_13
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13691..14893)
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y690_9RHIZ
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:AKH99520.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
ABC-type branched-chain amino acid transport system, periplasmic component
SCNpilot_expt_1000_bf_scaffold_2403_14
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15067..16353)
DNA (1287bp) protein (429aa)
VCBS protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46NG2_CUPPJ
hypothetical protein
VCBS protein {ECO:0000313|EMBL:AAZ65309.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_1000_bf_scaffold_2403_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17250..20771)
DNA (3522bp) protein (1174aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 RepID=V4Q477_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KKB09800.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
Displaying 15 items

View Taxonomy