ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2434

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2434_1
unknown

Not on your lists

comp(3..635)
DNA (633bp) protein (211aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2434_2
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

673..1002
DNA (330bp) protein (110aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
sensor signal transduction histidine kinase; K14980 two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
Histidine kinase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IW84_9SPHN
SCNpilot_expt_1000_bf_scaffold_2434_3
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

999..1421
DNA (423bp) protein (141aa)
HPr kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZC73_9SPHN
Scaffold3, whole genome shotgun sequence {ECO:0000313|EMBL:KIS33301.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
HPr kinase
SCNpilot_expt_1000_bf_scaffold_2434_4
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1477..2397
DNA (921bp) protein (307aa)
UPF0042 nucleotide-binding protein LH128_09996 n=1 Tax=Sphingomonas sp. LH128 RepID=J8SK54_9SPHN rbh
Nucleotide-binding protein LH128_09996 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein; K06958 UPF0042 nucleotide-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2434_5
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2453..2857
DNA (405bp) protein (135aa)
PTS system mannose-specific transporter subunit IIA (EC:2.7.1.69); K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
PTS fructose transporter subunit IIA n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6F2A5
PTS system fructose subfamily IIA component {ECO:0000313|EMBL:EJU13190.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_expt_1000_bf_scaffold_2434_6
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2863..3141
DNA (279bp) protein (93aa)
HPr kinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3E399
Serine kinase {ECO:0000313|EMBL:KEO88214.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein; K11189 phosphocarrier protein
SCNpilot_expt_1000_bf_scaffold_2434_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3146..3955
DNA (810bp) protein (270aa)
23S rRNA (Uridine(2479)-2'-O)-methyltransferase {ECO:0000313|EMBL:AKH42050.1}; EC=2.1.1.208 {ECO:0000313|EMBL:AKH42050.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
RNA methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B62254 rbh
tRNA/rRNA methyltransferase; K03437 RNA methyltransferase, TrmH family
SCNpilot_expt_1000_bf_scaffold_2434_8
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4307..5755)
DNA (1449bp) protein (483aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SK59_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJU13194.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein; K09760 DNA recombination protein RmuC
SCNpilot_expt_1000_bf_scaffold_2434_9
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5848..6264
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NCT2_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:KHS48664.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2434_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6286..6855)
DNA (570bp) protein (190aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] rbh
Peptide deformylase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A048_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2434_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7061..8215
DNA (1155bp) protein (385aa)
stearoyl-CoA 9-desaturase (EC:1.14.19.1)
fatty acid desaturase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B4CC79
Putative fatty acid desaturase {ECO:0000313|EMBL:GAD47486.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_2434_12
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8315..10126)
DNA (1812bp) protein (604aa)
phosphogluconate dehydratase (EC:4.2.1.12); K01690 phosphogluconate dehydratase [EC:4.2.1.12] rbh
Phosphogluconate dehydratase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WK27_9SPHN rbh
Phosphogluconate dehydratase {ECO:0000313|EMBL:KHK90654.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_2434_13
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10119..11561)
DNA (1443bp) protein (481aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] rbh
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EA28_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2434_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11569..13833)
DNA (2265bp) protein (755aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|SAAS:SAAS00018769}; EC=4.1.1.31 {ECO:0000256|SAAS:SAAS00018769};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphoenolpyruvate carboxylase (EC:4.1.1.31); K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
Phosphoenolpyruvate carboxylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G570_NOVAD
SCNpilot_expt_1000_bf_scaffold_2434_15
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13772..14305)
DNA (534bp) protein (178aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|SAAS:SAAS00018769}; EC=4.1.1.31 {ECO:0000256|SAAS:SAAS00018769};; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
phosphoenolpyruvate carboxylase (EC:4.1.1.31); K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
Phosphoenolpyruvate carboxylase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WK69_9SPHN
SCNpilot_expt_1000_bf_scaffold_2434_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14461..16719)
DNA (2259bp) protein (753aa)
Protein translocase subunit SecA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SECA_NOVAD
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
azi, div; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA
SCNpilot_expt_1000_bf_scaffold_2434_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16689..17111)
DNA (423bp) protein (141aa)
Protein translocase subunit SecA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SECA_NOVAD
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
azi, div; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA
SCNpilot_expt_1000_bf_scaffold_2434_18
unknown

Not on your lists

comp(17206..17562)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2434_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18070..19296
DNA (1227bp) protein (409aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase (EC:2.3.1.1 2.3.1.35); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] rbh
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6U1_NOVAD rbh
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_2434_20
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19293..20102
DNA (810bp) protein (270aa)
Inositol monophosphatase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9R2_9SPHN rbh
Inositol monophosphatase {ECO:0000313|EMBL:EGD58680.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
inositol monophosphatase rbh
SCNpilot_expt_1000_bf_scaffold_2434_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20141..20461)
DNA (321bp) protein (107aa)
Thioredoxin n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9R1_9SPHN
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thioredoxin; K03671 thioredoxin 1
SCNpilot_expt_1000_bf_scaffold_2434_22
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20538..24011)
DNA (3474bp) protein (1158aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
ATP-dependent exoDNAse beta subunit n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IG48_9SPHN rbh
ATP-dependent exoDNAse subunit beta rbh
SCNpilot_expt_1000_bf_scaffold_2434_23
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24008..26899)
DNA (2892bp) protein (964aa)
Helicase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IG49_9SPHN rbh
Helicase {ECO:0000313|EMBL:KHK91407.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
helicase rbh
SCNpilot_expt_1000_bf_scaffold_2434_24
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26967..27701)
DNA (735bp) protein (245aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium RepID=F6IG50_9SPHN rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EHJ59147.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_2434_25
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27698..28687)
DNA (990bp) protein (330aa)
Aminoglycoside phosphotransferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VJN8_9SPHN rbh
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:EJU12987.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
aminoglycoside phosphotransferase; K07102 rbh
SCNpilot_expt_1000_bf_scaffold_2434_26
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28678..29127)
DNA (450bp) protein (150aa)
ATPase, YjeE family n=1 Tax=Novosphingobium sp. AP12 RepID=J2PKU4_9SPHN
ATPase, YjeE family {ECO:0000313|EMBL:EJL28002.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein; K06925 UPF0079 ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2434_27
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29294..31651)
DNA (2358bp) protein (786aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-) rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EI10_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2434_28
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31765..32343)
DNA (579bp) protein (193aa)
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
Adenosylhomocysteinase {ECO:0000255|HAMAP-Rule:MF_00563}; EC=3.3.1.1 {ECO:0000255|HAMAP-Rule:MF_00563};; S-adenosyl-L-homocysteine hydrolase {ECO:0000255|HAMAP-Rule:MF_00563}; Short=AdoHcyase {ECO:0000255|HAMAP-Rule:MF_00563};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Adenosylhomocysteinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SAHH_NOVAD
SCNpilot_expt_1000_bf_scaffold_2434_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32285..32950)
DNA (666bp) protein (222aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
adenosylhomocysteinase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
Adenosylhomocysteinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W6C0_9SPHN
Displaying 29 items

View Taxonomy