ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2505

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2505_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..297
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DB65FC
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB85924.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
appF; oligopeptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2505_2
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

294..2246
DNA (1953bp) protein (651aa)
esterase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037A4B3D
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AEH90224.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_2505_3
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2249..3340
DNA (1092bp) protein (364aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
anmK; anhydro-N-acetylmuramic acid kinase; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YKT5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2505_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3347..4189)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003813C6B
Uncharacterized protein {ECO:0000313|EMBL:KKB07099.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2505_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4213..4635)
DNA (423bp) protein (141aa)
GCN5-related N-acetyltransferase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VA57_9RHIZ
Putative acetyltransferase {ECO:0000313|EMBL:AHK45069.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
putative acetyltransferase
SCNpilot_expt_1000_bf_scaffold_2505_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4635..5513)
DNA (879bp) protein (293aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMAP-Rule:MF_00068};; N-acetylmuramic acid 6-phosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00068}; N-acetylmuramic acid 6-phosphate lyase {ECO:0000256|HAMAP-Rule:MF_00068}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Glucokinase regulatory-like protein (EC:4.2.-.-); K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] rbh
N-acetylmuramic acid-6-phosphate etherase n=2 Tax=Ketogulonicigenium vulgare RepID=E3EY15_KETVY rbh
SCNpilot_expt_1000_bf_scaffold_2505_7
unknown

Not on your lists

5672..6013
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2505_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6543..7832
DNA (1290bp) protein (430aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9M6_PELHB
SCNpilot_expt_1000_bf_scaffold_2505_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7996..8424
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9M0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10779.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2505_10
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8424..9716
DNA (1293bp) protein (431aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
histidinol dehydrogenase n=1 Tax=Kaistia granuli RepID=UPI00037464E5
hisD; histidinol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2505_11
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9722..10204
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036D88F3
UPF0262 protein BG36_18985 {ECO:0000256|HAMAP-Rule:MF_00678}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2505_12
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10220..10711
DNA (492bp) protein (164aa)
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TL89_MESCW
protein-tyrosine-phosphatase
Protein-tyrosine phosphatase, low molecular weight {ECO:0000313|EMBL:ADV11513.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_2505_13
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10801..11019
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=12 Tax=Phyllobacteriaceae RepID=IF1_RHILO
translation initiation factor IF-1; K02518 translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_2505_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11064..11690
DNA (627bp) protein (209aa)
Maf-like protein NA2_02429 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LS77_9RHIZ rbh
Maf-like protein MAXJ12_24832 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
MAF protein
SCNpilot_expt_1000_bf_scaffold_2505_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11694..11903
DNA (210bp) protein (70aa)
UPI0003CFDE06 related cluster n=1 Tax=unknown RepID=UPI0003CFDE06
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
zinc-binding protein; K09862 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2505_16
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12263..12664)
DNA (402bp) protein (134aa)
Putative attachment-related protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NK75_9RHIZ
Putative attachment-related protein {ECO:0000313|EMBL:EKF39850.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
putative attachment-related protein
SCNpilot_expt_1000_bf_scaffold_2505_17
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12755..13240
DNA (486bp) protein (162aa)
Putrescine transporter subunit: membrane component of ABC superfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F6M8_9RHIZ
Putrescine transporter subunit: membrane component of ABC superfamily {ECO:0000313|EMBL:CCV12140.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
putative permease component of ABC transporter
Displaying 17 items

View Taxonomy