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SCNpilot_expt_1000_bf_scaffold_2623

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2623_1
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..361
DNA (360bp) protein (120aa)
Phage shock protein A, PspA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G972_NOVAD
phage shock protein A, PspA; K03969 phage shock protein A
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCNpilot_expt_1000_bf_scaffold_2623_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

366..656
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G971_NOVAD
Phage shock protein B {ECO:0000313|EMBL:AKH41088.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K03970 phage shock protein B
SCNpilot_expt_1000_bf_scaffold_2623_3
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

653..1030
DNA (378bp) protein (126aa)
Phage shock protein C, PspC n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G970_NOVAD
phage shock protein C, PspC; K03973 phage shock protein C
Phage shock protein C, PspC {ECO:0000313|EMBL:ABD25603.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_2623_4
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1340..1573
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NC30_ERYLH
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCNpilot_expt_1000_bf_scaffold_2623_5
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1597..2004
DNA (408bp) protein (136aa)
Fe-S metabolism associated SufE n=2 Tax=Novosphingobium RepID=F6IKT3_9SPHN
Fe-S metabolism associated SufE; K02426 cysteine desulfuration protein SufE
Fe-S metabolism associated SufE {ECO:0000313|EMBL:CCA92035.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_2623_6
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2191..3462)
DNA (1272bp) protein (424aa)
Cytochrome P450 n=1 Tax=Novosphingobium sp. AP12 RepID=J2H001_9SPHN rbh
Cytochrome P450 {ECO:0000313|EMBL:KHK93101.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
cytochrome P450
SCNpilot_expt_1000_bf_scaffold_2623_7
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3483..3809)
DNA (327bp) protein (109aa)
Ferredoxin n=1 Tax=Sphingomonas sp. LH128 RepID=J8VG05_9SPHN
Ferredoxin {ECO:0000313|EMBL:EZP83625.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
ferredoxin, 2fe-2s fdii electron transport iron-sulfur protein; K04755 ferredoxin, 2Fe-2S
SCNpilot_expt_1000_bf_scaffold_2623_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3925..4590
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CRD1_SPHYA
Transcriptional regulator {ECO:0000313|EMBL:KFD28018.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2623_9
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4780..5670)
DNA (891bp) protein (297aa)
Putative taurine catabolism dioxygenase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AJB5_9SPHN rbh
Taurine catabolism dioxygenase TauD {ECO:0000313|EMBL:KHK90575.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
putative taurine catabolism dioxygenase
SCNpilot_expt_1000_bf_scaffold_2623_10
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5690..6457)
DNA (768bp) protein (256aa)
enoyl-CoA hydratase n=1 Tax=Burkholderia sp. JPY251 RepID=UPI00035C6C8F
Uncharacterized protein {ECO:0000313|EMBL:KHK91553.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
enoyl-CoA hydratase/isomerase
SCNpilot_expt_1000_bf_scaffold_2623_11
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6469..7260)
DNA (792bp) protein (264aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8SES8_9SPHN rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EJU11329.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2623_12
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7299..7718)
DNA (420bp) protein (140aa)
Protein ApaG n=1 Tax=Sphingomonas sp. LH128 RepID=J8VTJ6_9SPHN
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
apaG; ApaG protein; K06195 ApaG protein
SCNpilot_expt_1000_bf_scaffold_2623_13
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7832..9040)
DNA (1209bp) protein (403aa)
cystathionine gamma-synthase (EC:2.5.1.48); K01739 cystathionine gamma-synthase [EC:2.5.1.48]
Cystathionine gamma-synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJ95_9SPHN rbh
Cystathionine gamma-synthase {ECO:0000313|EMBL:GAD48252.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_2623_14
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9151..10434
DNA (1284bp) protein (428aa)
Dolichyl-phosphate-mannose--protein O-mannosyl transferase n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q2D4_9SPHN rbh
Dolichyl-phosphate-mannose--protein O-mannosyl transferase {ECO:0000313|EMBL:EJL34297.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
glycosyl transferase family protein rbh
SCNpilot_expt_1000_bf_scaffold_2623_15
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11019..11810)
DNA (792bp) protein (264aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Frankia sp. CN3 RepID=G6H8Y6_9ACTO rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADP82447.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_expt_1000_bf_scaffold_2623_16
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11812..12732)
DNA (921bp) protein (307aa)
alpha/beta hydrolase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFF319
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:GAK45656.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
alpha/beta hydrolase
SCNpilot_expt_1000_bf_scaffold_2623_17
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12735..14267)
DNA (1533bp) protein (511aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Novosphingobium sp. AP12 RepID=J2GF20_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK93090.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
SCNpilot_expt_1000_bf_scaffold_2623_18
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14382..15542
DNA (1161bp) protein (387aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SBP8_9SPHN
multi-sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_2623_19
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15535..16167
DNA (633bp) protein (211aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQA5_SPHAL
two component LuxR family transcriptional regulator; K14987 two-component system, LuxR family, response regulator FixJ
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABF54167.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_2623_20
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16367..16606)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HHK0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB12512.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
SCNpilot_expt_1000_bf_scaffold_2623_21
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16777..17166)
DNA (390bp) protein (130aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=T0I1Q5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EPR17144.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2623_22
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17389..18189
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IML8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE53587.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
UspA domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2623_23
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18400..19086)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI00036F35D4 rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB13001.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
Crp/FNR family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
SCNpilot_expt_1000_bf_scaffold_2623_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19173..20486)
DNA (1314bp) protein (438aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
Coproporphyrinogen-III oxidase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXZ0_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2623_25
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20751..21143
DNA (393bp) protein (131aa)
Globin n=3 Tax=Sphingomonadaceae RepID=F6ESW7_SPHCR
globin; K06886 hemoglobin
Globin-like protein {ECO:0000313|EMBL:KEQ55566.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
SCNpilot_expt_1000_bf_scaffold_2623_26
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21351..22766)
DNA (1416bp) protein (472aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ED42_9SPHN rbh
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KHK92684.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
rieske (2Fe-2S) domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_2623_27
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22807..23652)
DNA (846bp) protein (282aa)
Putative taurine catabolism dioxygenase n=1 Tax=Sphingobium sp. AP49 RepID=J2DUL6_9SPHN
Dioxygenase {ECO:0000313|EMBL:KHK91008.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
taurine catabolism dioxygenase TauD/TfdA
SCNpilot_expt_1000_bf_scaffold_2623_28
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23740..24543)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CU76_SPHYA
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KHK92275.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Rieske (2Fe-2S) domain-containing protein
Displaying 28 items

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