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SCNpilot_expt_1000_bf_scaffold_2756

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2756_1
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..466)
DNA (465bp) protein (155aa)
endoglucanase; K01179 endoglucanase [EC:3.2.1.4]; K01183 chitinase [EC:3.2.1.14]
Cadherin n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4BF8
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_1000_bf_scaffold_2756_2
unknown

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comp(519..659)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2756_3
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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836..1102
DNA (267bp) protein (89aa)
Putative insertion sequence transposase protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WAX2_9SPHN
Putative insertion sequence transposase protein {ECO:0000313|EMBL:EIZ77273.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
transposase
SCNpilot_expt_1000_bf_scaffold_2756_4
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1298..2038
DNA (741bp) protein (247aa)
Insertion sequence IS2A uncharacterized 48.2 kDa protein (Fragment) n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M709_9RHIZ rbh
Insertion sequence IS2A uncharacterized 48.2 kDa protein {ECO:0000313|EMBL:EKF16820.1}; Flags: Fragment;; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
integrase catalytic subunit rbh
SCNpilot_expt_1000_bf_scaffold_2756_5
Bordetella holmesii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2022..3554)
DNA (1533bp) protein (511aa)
Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family protein {ECO:0000313|EMBL:AHV93500.1}; EC=1.1.-.- {ECO:0000313|EMBL:AHV93500.1};; TaxID=1247649 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella holmesii ATCC 51541.;"
Quinate dehydrogenase n=2 Tax=Bordetella holmesii RepID=M5NKA4_9BORD
quinate dehydrogenase (Pyrroloquinoline-quinone)
SCNpilot_expt_1000_bf_scaffold_2756_6
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3557..4390)
DNA (834bp) protein (278aa)
quinate dehydrogenase n=1 Tax=Kaistia granuli RepID=UPI00036C7B60
PQQ dehydrogenase family protein {ECO:0000313|EMBL:EKF41923.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
gcd; membrane-bound PQQ-dependent dehydrogenase glucose/quinate/shikimate family
SCNpilot_expt_1000_bf_scaffold_2756_7
unknown

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4429..4791
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2756_8
unknown

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5012..5209
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2756_9
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5297..6460)
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GSG7_SPHAL rbh
acyl-CoA dehydrogenase-like protein rbh
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_expt_1000_bf_scaffold_2756_10
Pseudomonas sp. 10-1B, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6711..8060
DNA (1350bp) protein (450aa)
MmgE/PrpD family protein n=1 Tax=Pseudomonas plecoglossicida NB2011 RepID=S2KF38_9PSED
2-methylcitrate dehydratase {ECO:0000313|EMBL:KIY38777.1}; TaxID=1546029 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 10-1B.;"
MmgE/PrpD family protein
SCNpilot_expt_1000_bf_scaffold_2756_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8228..10462
DNA (2235bp) protein (745aa)
TonB-dependent receptor n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VE38_SPHWW rbh
TonB-dependent receptor {ECO:0000313|EMBL:EZP74512.1}; Flags: Precursor;; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
TonB-dependent receptor rbh
SCNpilot_expt_1000_bf_scaffold_2756_12
Marinomonas mediterranea, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10452..11384)
DNA (933bp) protein (311aa)
Transcriptional regulator, LysR family n=1 Tax=Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) RepID=F2JZV2_MARM1
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADZ92064.1}; TaxID=717774 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028; / MMB-1).;"
SCNpilot_expt_1000_bf_scaffold_2756_13
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11490..12623
DNA (1134bp) protein (378aa)
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:CCW17983.1}; EC=2.8.3.16 {ECO:0000313|EMBL:CCW17983.1};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MRA6_9SPHN rbh
putative carnitine dehydratase/acyl-CoA transferases-related (COG1804) rbh
SCNpilot_expt_1000_bf_scaffold_2756_14
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12620..12946
DNA (327bp) protein (109aa)
Major facilitator superfamily MFS_1 n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F1L2_SPHCR
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEG51428.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
Displaying 14 items

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