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SCNpilot_expt_1000_bf_scaffold_2954

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2954_1
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140..610)
DNA (471bp) protein (157aa)
Fur family transcriptional regulator, zinc uptake regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8VT53_9SPHN
Fur family transcriptional regulator, zinc uptake regulator {ECO:0000313|EMBL:EJU11228.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
Fur family transcriptional regulator, zinc uptake regulator; K09823 Fur family transcriptional regulator, zinc uptake regulator
SCNpilot_expt_1000_bf_scaffold_2954_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(642..1199)
DNA (558bp) protein (186aa)
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
methionine sulfoxide reductase A n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B333B8
SCNpilot_expt_1000_bf_scaffold_2954_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1882..3468)
DNA (1587bp) protein (529aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] rbh
Bifunctional purine biosynthesis protein PurH n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKG3_9SPHN rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_2954_4
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3477..4346)
DNA (870bp) protein (290aa)
Heparinase II/III-like n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFL3_9SPHN
heparinase II/III-like
Heparinase II/III-like {ECO:0000313|EMBL:CCA91088.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_2954_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5354..6016)
DNA (663bp) protein (221aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] rbh
Ribulose-phosphate 3-epimerase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5T9_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_2954_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6450..6770
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC71_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54337.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2954_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6968..7774)
DNA (807bp) protein (269aa)
Nucleotidyl transferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC72_NOVAD rbh
nucleotidyl transferase rbh
Nucleotidyl transferase {ECO:0000313|EMBL:ABD24551.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_2954_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7821..8921)
DNA (1101bp) protein (367aa)
Inositol-1-phosphate synthase {ECO:0000313|EMBL:GAO54335.1}; EC=5.5.1.4 {ECO:0000313|EMBL:GAO54335.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
myo-inositol-1-phosphate synthase; K01858 myo-inositol-1-phosphate synthase [EC:5.5.1.4] rbh
Myo-inositol-1-phosphate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC73_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_2954_9
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9187..10140
DNA (954bp) protein (318aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC75_NOVAD
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:KHS47843.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
CDP-alcohol phosphatidyltransferase
SCNpilot_expt_1000_bf_scaffold_2954_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10277..11497
DNA (1221bp) protein (407aa)
peptidase M20D, amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32] rbh
Peptidase M20D, amidohydrolase {ECO:0000313|EMBL:ABD26785.1}; EC=3.5.1.32 {ECO:0000313|EMBL:ABD26785.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Peptidase M20D, amidohydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5T8_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_2954_11
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11505..11900
DNA (396bp) protein (132aa)
glyoxalase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B47A80
Uncharacterized protein {ECO:0000313|EMBL:KGJ69544.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2954_12
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12131..12511
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBT2_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD24691.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_2954_13
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12628..13068
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBT3_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD24690.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_2954_14
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13065..13589
DNA (525bp) protein (175aa)
Thiol-disulfide isomerase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z6V0_9SPHN
Thiol-disulfide isomerase {ECO:0000313|EMBL:EGD59760.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
thiol-disulfide isomerase
SCNpilot_expt_1000_bf_scaffold_2954_15
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13594..14064
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Amycolatopsis azurea DSM 43854 RepID=M2Q9Z6_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:KHK92254.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
pyridoxamine 5'-phosphate oxidase
SCNpilot_expt_1000_bf_scaffold_2954_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14475..16322
DNA (1848bp) protein (616aa)
DEAD/DEAH box helicase-like protein; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] rbh
Putative helicase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIU8_9SPHN rbh
Putative helicase {ECO:0000313|EMBL:GAD48072.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_2954_17
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16171..17067)
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2D6_SPHCR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEG50598.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_2954_18
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17333..18604
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WBZ4_9SPHN rbh
Arabinose ABC transporter permease {ECO:0000313|EMBL:KHK92682.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2954_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18810..20261
DNA (1452bp) protein (484aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBE2_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH43266.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2954_20
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20313..21668
DNA (1356bp) protein (452aa)
Peptidase M48, Ste24p n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBE1_9SPHN rbh
peptidase M48, Ste24p rbh
Peptidase M48, Ste24p {ECO:0000313|EMBL:EHJ61366.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_2954_21
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21680..22399
DNA (720bp) protein (240aa)
DSBA oxidoreductase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HIH7_9SPHN
DSBA oxidoreductase {ECO:0000313|EMBL:KHK92681.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
DsbA oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2954_22
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22480..23640
DNA (1161bp) protein (387aa)
Histidine kinase internal region n=2 Tax=Novosphingobium RepID=F6IKG6_9SPHN rbh
histidine kinase internal region rbh
Histidine kinase internal region {ECO:0000313|EMBL:CCA94407.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_2954_23
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23690..24499
DNA (810bp) protein (270aa)
Two-component system, LytT family, response regulator n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBD8_9SPHN rbh
Two-component system, LytT family, response regulator {ECO:0000313|EMBL:EHJ61363.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
two-component system LytT family response regulator rbh
SCNpilot_expt_1000_bf_scaffold_2954_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24831..26924)
DNA (2094bp) protein (698aa)
(p)ppGpp synthetase SpoT/RelA (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] rbh
Putative guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YP18_9SPHN rbh
Putative guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase {ECO:0000313|EMBL:GAD50347.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_2954_25
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27039..27824
DNA (786bp) protein (262aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
Short-chain dehydrogenase/reductase SDR n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RF69_PHEZH rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACG78639.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_2954_26
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27851..28903
DNA (1053bp) protein (351aa)
polysaccharide deacetylase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028A0F57
Uncharacterized protein {ECO:0000313|EMBL:KDP73002.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
putative xylanase/chitin deacetylase
SCNpilot_expt_1000_bf_scaffold_2954_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29139..30830
DNA (1692bp) protein (564aa)
ATPase AAA (EC:3.6.4.6); K13525 transitional endoplasmic reticulum ATPase
ATPase AAA n=1 Tax=Sphingomonas sp. LH128 RepID=J8VY19_9SPHN
Cell division protein ftsH {ECO:0000313|EMBL:GAO54063.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_expt_1000_bf_scaffold_2954_28
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30827..31414
DNA (588bp) protein (196aa)
ATPase AAA (EC:3.6.4.6); K13525 transitional endoplasmic reticulum ATPase
ATPase AAA n=1 Tax=Sphingomonas sp. LH128 RepID=J8VY19_9SPHN
ATPase AAA {ECO:0000313|EMBL:KHK89502.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_2954_29
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31427..32722)
DNA (1296bp) protein (432aa)
signal transduction histidine kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B65668
Uncharacterized protein {ECO:0000313|EMBL:GAD47512.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_2954_30
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32719..34362)
DNA (1644bp) protein (548aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I n=1 Tax=Novosphingobium sp. AP12 RepID=J2GVP4_9SPHN
DNA polymerase I {ECO:0000313|EMBL:EJL26978.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
Displaying items 1-30 of 32 in total

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