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SCNpilot_expt_1000_bf_scaffold_2973

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2973_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2..505
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003781618
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_2973_2
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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695..1228
DNA (534bp) protein (178aa)
General secretion pathway, GspH n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZK25_9PROT
General secretion pathway, GspH; K08084 type IV fimbrial biogenesis protein FimT
General secretion pathway, GspH {ECO:0000313|EMBL:ADZ27685.1}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
SCNpilot_expt_1000_bf_scaffold_2973_3
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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1219..1662
DNA (444bp) protein (148aa)
Type IV pilus modification protein PilV n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IUE4_9GAMM
type IV pilus modification protein PilV; K02671 type IV pilus assembly protein PilV
Tax=RBG_16_Gammaproteobacteria_57_12_curated
SCNpilot_expt_1000_bf_scaffold_2973_4
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1659..2477
DNA (819bp) protein (273aa)
putative Tfp pilus assembly protein PilW; K02672 type IV pilus assembly protein PilW id=12497897 bin=THIO_MID species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative Tfp pilus assembly protein PilW; K02672 type IV pilus assembly protein PilW
Putative Tfp pilus assembly protein PilW {ECO:0000313|EMBL:AEJ00078.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
SCNpilot_expt_1000_bf_scaffold_2973_5
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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2474..3037
DNA (564bp) protein (188aa)
Tfp pilus assembly protein PilX id=12497896 bin=THIO_MID species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tfp pilus assembly protein PilX
Tfp pilus assembly protein PilX {ECO:0000313|EMBL:AGA91846.1}; Flags: Precursor;; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
SCNpilot_expt_1000_bf_scaffold_2973_6
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3064..7917
DNA (4854bp) protein (1618aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036C8254 rbh
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG20528.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
PilC domain-containing protein; K02674 type IV pilus assembly protein PilY1
SCNpilot_expt_1000_bf_scaffold_2973_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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7992..8408
DNA (417bp) protein (139aa)
fimbrial protein pilin; K02655 type IV pilus assembly protein PilE id=12497894 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
fimbrial protein pilin; K02655 type IV pilus assembly protein PilE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_2973_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8439..8810)
DNA (372bp) protein (124aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003776AEC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 8 items

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