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SCNpilot_expt_1000_bf_scaffold_1063

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1063_1
Nuclearia simplex, Nuclearia, Eukaryota

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2245..3678
DNA (1434bp) protein (478aa)
NADH-ubiquinone oxidoreductase chain 4 {ECO:0000256|RuleBase:RU003297}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU003297};; TaxID=154970 species="Eukaryota; Nucleariidae and Fonticula group; Nucleariidae; Nuclearia.;" source="Nuclearia simplex.;"
nad4, ndhD; nad4; K03881 NADH-ubiquinone oxidoreductase chain 4 [EC:1.6.5.3]
NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Nuclearia simplex RepID=M1JZU2_9EUKA rbh
SCNpilot_expt_1000_bf_scaffold_1063_2
Chrysochromulina sp. NIES-1333, Chrysochromulina, Prymnesiales, Eukaryota

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3686..5131
DNA (1446bp) protein (482aa)
nuoN; NADH-ubiquinone oxidoreductase chain N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3]
NADH dehydrogenase subunit 2 n=1 Tax=Heterosigma akashiwo RepID=D3IUS8_9STRA
NADH dehydrogenase subunit 2 {ECO:0000313|EMBL:BAP05412.1}; TaxID=407208 species="Eukaryota; Haptophyceae; Prymnesiales; Chrysochromulinaceae; Chrysochromulina.;" source="Chrysochromulina sp. NIES-1333.;"
SCNpilot_expt_1000_bf_scaffold_1063_3
unknown

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comp(5443..5940)
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1063_4
unknown

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comp(6589..6720)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1063_5
unknown

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comp(6727..7017)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1063_6
Neorickettsia risticii, Neorickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7092..7460)
DNA (369bp) protein (123aa)
30S ribosomal protein S11 n=1 Tax=Neorickettsia risticii (strain Illinois) RepID=C6V4F1_NEORI
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=434131 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Neorickettsia.;" source="Neorickettsia risticii (strain Illinois).;"
SCNpilot_expt_1000_bf_scaffold_1063_7
unknown

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comp(7900..8640)
DNA (741bp) protein (247aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1063_8
Nuclearia simplex, Nuclearia, Eukaryota

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comp(9242..9466)
DNA (225bp) protein (75aa)
ATP synthase protein 9; K02128 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
ATP synthase subunit 9, mitochondrial n=1 Tax=Nuclearia simplex RepID=M1K3L1_9EUKA
ATP synthase subunit 9, mitochondrial {ECO:0000256|RuleBase:RU003575}; TaxID=154970 species="Eukaryota; Nucleariidae and Fonticula group; Nucleariidae; Nuclearia.;" source="Nuclearia simplex.;"
SCNpilot_expt_1000_bf_scaffold_1063_9
Phlebiopsis gigantea, Phlebiopsis, Polyporales, Agaricomycetes, Basidiomycota, Fungi

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comp(9609..9905)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) RepID=K5WH30_PHACS
Uncharacterized protein {ECO:0000313|EMBL:KIP08109.1}; TaxID=745531 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Polyporales; Phanerochaetaceae; Phlebiopsis.;" source="Phlebiopsis gigantea 11061_1 CR5-6.;"
KLTH0A07018p
SCNpilot_expt_1000_bf_scaffold_1063_10
unknown

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comp(10238..10792)
DNA (555bp) protein (185aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1063_11
Chaetosphaeridium globosum, Chaetosphaeridium, Coleochaetales, Coleochaetophyceae, Streptophyta, Viridiplantae

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comp(10876..11463)
DNA (588bp) protein (196aa)
NADH-ubiquinone oxidoreductase chain 6 {ECO:0000256|RuleBase:RU004430}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU004430};; TaxID=96477 species="Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales; Chaetosphaeridiaceae; Chaetosphaeridium.;" source="Chaetosphaeridium globosum (Charophycean green alga) (Herposteiron; globosum).;"
nad6; NADH dehydrogenase subunit 6; K03884 NADH-ubiquinone oxidoreductase chain 6 [EC:1.6.5.3]
NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Chaetosphaeridium globosum RepID=Q8M1F1_CHAGL
SCNpilot_expt_1000_bf_scaffold_1063_12
Phlebiopsis gigantea, Phlebiopsis, Polyporales, Agaricomycetes, Basidiomycota, Fungi

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comp(12203..12481)
DNA (279bp) protein (93aa)
Cytochrome c oxidase subunit 1 {ECO:0000256|RuleBase:RU000369}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU000369};; TaxID=745531 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Polyporales; Phanerochaetaceae; Phlebiopsis.;" source="Phlebiopsis gigantea 11061_1 CR5-6.;"
cox1; cytochrome c oxidase subunit 1; K02256 cytochrome c oxidase subunit 1 [EC:1.9.3.1]
Cytochrome c oxidase subunit 1 n=1 Tax=Trametes cingulata RepID=D3YNL3_9APHY
SCNpilot_expt_1000_bf_scaffold_1063_13
Chaetosphaeridium globosum, Chaetosphaeridium, Coleochaetales, Coleochaetophyceae, Streptophyta, Viridiplantae

Not on your lists

comp(12824..14263)
DNA (1440bp) protein (480aa)
Cytochrome c oxidase subunit 1 {ECO:0000256|RuleBase:RU000369}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU000369};; TaxID=96477 species="Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales; Chaetosphaeridiaceae; Chaetosphaeridium.;" source="Chaetosphaeridium globosum (Charophycean green alga) (Herposteiron; globosum).;"
Cox1_2; Cox1_2; K02256 cytochrome c oxidase subunit 1 [EC:1.9.3.1]
Cytochrome c oxidase subunit 1 n=1 Tax=Chaetosphaeridium globosum RepID=Q8M1D5_CHAGL
SCNpilot_expt_1000_bf_scaffold_1063_14
Lentinula edodes, Lentinula, Agaricales, Agaricomycetidae, Basidiomycota, Fungi

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comp(14270..15196)
DNA (927bp) protein (309aa)
BI4; Bi4p (EC:3.1.-.-); K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
Intronic ORF at intron 3 of cox1 protein n=1 Tax=Lentinula edodes RepID=I7HBM2_LENED rbh
Intronic ORF at intron 3 of cox1 protein {ECO:0000313|EMBL:BAM29318.1}; TaxID=5353 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Omphalotaceae; Lentinula.;" source="Lentinula edodes (Shiitake mushroom) (Lentinus edodes).;"
SCNpilot_expt_1000_bf_scaffold_1063_15
Microspora stagnorum, Microspora, Chlorophyceae, Chlorophyta, Viridiplantae

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comp(15915..16931)
DNA (1017bp) protein (339aa)
Putative LAGLIDADG homing endonuclease n=1 Tax=Microspora stagnorum RepID=U5YE33_9CHLO rbh
Putative LAGLIDADG homing endonuclease {ECO:0000313|EMBL:AGZ90354.1}; TaxID=163317 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Microsporaceae; Microspora.;" source="Microspora stagnorum (Green alga).;"
orf313; orf313
SCNpilot_expt_1000_bf_scaffold_1063_16
unknown

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comp(18072..18206)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1063_17
Ustilago maydis, Ustilago, Ustilaginales, Ustilaginomycetes, Basidiomycota, Fungi

Not on your lists

comp(18621..19019)
DNA (399bp) protein (133aa)
cox1; cytochrome c oxidase subunit 1; K02256 cytochrome c oxidase subunit 1 [EC:1.9.3.1]
Probable intron-encoded endonuclease aI5; Contains:; Truncated non-functional cytochrome oxidase 1; Contains:; Intron-encoded endonuclease aI5; EC=3.1.-.-;; Flags: Precursor;; TaxID=237631 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago.;" source="Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus).;"
Probable intron-encoded endonuclease aI4 n=2 Tax=Ustilago maydis RepID=AI4_USTMA
SCNpilot_expt_1000_bf_scaffold_1063_18
Tachysurus fulvidraco, Tachysurus, Siluriformes, Neopterygii, Chordata, Metazoa

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comp(19110..19478)
DNA (369bp) protein (123aa)
Cytochrome c oxidase subunit 3 n=3 Tax=Clupeocephala RepID=G0WRL3_TACFU
Cytochrome c oxidase subunit 3 {ECO:0000256|RuleBase:RU003375}; TaxID=1234273 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus.;" source="Tachysurus fulvidraco (Yellow catfish) (Pimelodus fulvidraco).;"
COX3; cytochrome c oxidase subunit III; K02262 cytochrome c oxidase subunit 3
SCNpilot_expt_1000_bf_scaffold_1063_19
Rhizophagus irregularis, Rhizophagus, Glomerales, Glomeromycetes, Glomeromycota, Fungi

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comp(19987..21120)
DNA (1134bp) protein (378aa)
hypothetical protein GlirM_p27 n=1 Tax=Rhizophagus irregularis RepID=UPI0001E24ED1
Putative uncharacterized protein orf229 {ECO:0000313|EMBL:ADM94801.1}; TaxID=747089 species="Eukaryota; Fungi; Glomeromycota; Glomeromycetes; Glomerales; Glomeraceae; Rhizophagus.;" source="Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL; 43194) (Arbuscular mycorrhizal fungus) (Glomus intraradices).;"
cox3-i3; COX3-i1
Displaying 19 items

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