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SCNpilot_expt_1000_bf_scaffold_1398

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1398_1
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..844
DNA (843bp) protein (281aa)
Theronine dehydrogenase-like Zn-dependent dehydrogenase n=1 Tax=Sphingobium sp. AP49 RepID=J2LEL1_9SPHN rbh
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:EJK85926.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1398_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(863..1891)
DNA (1029bp) protein (343aa)
biotin synthase (EC:2.8.1.6); K01012 biotin synthetase [EC:2.8.1.6] rbh
Biotin synthase {ECO:0000255|HAMAP-Rule:MF_01694}; EC=2.8.1.6 {ECO:0000255|HAMAP-Rule:MF_01694};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
biotin synthase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B5CBB5 rbh
SCNpilot_expt_1000_bf_scaffold_1398_3
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1944..3101
DNA (1158bp) protein (386aa)
isovaleryl-CoA dehydrogenase (EC:1.3.99.10); K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4] rbh
Isovaleryl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VSN8_9SPHN rbh
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:EZP84802.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_1000_bf_scaffold_1398_4
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3170..3982
DNA (813bp) protein (271aa)
taurine catabolism dioxygenase TauD/TfdA; K03119 taurine dioxygenase [EC:1.14.11.17]
Putative taurine catabolism dioxygenase n=1 Tax=Novosphingobium sp. AP12 PF2_9SPHN">RepID=J2ZPF2_9SPHN
Putative taurine catabolism dioxygenase {ECO:0000313|EMBL:EJL20694.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_1398_5
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4134..5009
DNA (876bp) protein (292aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Novosphingobium sp. AP12 RepID=J2H7B1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK91727.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1398_6
unknown

Not on your lists

comp(5458..5805)
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1398_7
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6241..7149
DNA (909bp) protein (303aa)
PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=Novosphingobium sp. AP12 RepID=J2G0Y4_9SPHN
Alcohol dehydrogenase {ECO:0000313|EMBL:KHK91334.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1398_8
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7916..8494)
DNA (579bp) protein (193aa)
HNH endonuclease n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L0D3_9SPHN
HNH endonuclease
HNH endonuclease {ECO:0000313|EMBL:EIZ77689.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_expt_1000_bf_scaffold_1398_9
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8627..9442
DNA (816bp) protein (272aa)
glutamyl-tRNA synthetase; K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] rbh
Glutamyl-tRNA synthetase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HPL1_9SPHN rbh
Glutamyl-tRNA synthetase {ECO:0000313|EMBL:EQB18286.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_expt_1000_bf_scaffold_1398_10
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9439..9666
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C1M8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ77687.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1398_11
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9726..10292
DNA (567bp) protein (189aa)
cob(I)alamin adenosyltransferase (EC:2.5.1.17)
Cob(I)yrinic acid a,c-diamide adenosyltransferase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I1T5_9SPHN rbh
Scaffold4, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32654.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
SCNpilot_expt_1000_bf_scaffold_1398_12
unknown

Not on your lists

10362..10733
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1398_13
unknown

Not on your lists

10730..11062
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1398_14
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11108..11401
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L0C7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA10211.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1398_15
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11402..11974)
DNA (573bp) protein (191aa)
DNA mismatch repair protein MutS n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL75_9SPHN
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_expt_1000_bf_scaffold_1398_16
Aureococcus anophagefferens, Aureococcus, Pelagomonadales, Pelagophyceae, Eukaryota

Not on your lists

comp(12074..13498)
DNA (1425bp) protein (475aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens RepID=F0Y525_AURAN
Putative uncharacterized protein {ECO:0000313|EMBL:EGB09872.1}; Flags: Fragment;; TaxID=44056 species="Eukaryota; Stramenopiles; Pelagophyceae; Pelagomonadales; Aureococcus.;" source="Aureococcus anophagefferens (Harmful bloom alga).;"
Srrm1; serine/arginine repetitive matrix 1
SCNpilot_expt_1000_bf_scaffold_1398_17
unknown

Not on your lists

13541..13759
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1398_18
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14100..16367
DNA (2268bp) protein (756aa)
Malic enzyme {ECO:0000313|EMBL:KHS47674.1}; EC=1.1.1.40 {ECO:0000313|EMBL:KHS47674.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
malic enzyme (EC:1.1.1.40); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
NADP-dependent malic enzyme n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2Z3_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_1398_19
unknown

Not on your lists

comp(16434..17009)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Methylobacter sp. UW 659-2-H10 RepID=UPI00036CF79D
SCNpilot_expt_1000_bf_scaffold_1398_20
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17248..17436
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W1J7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP84446.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1398_21
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17577..19712
DNA (2136bp) protein (712aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QHI9_SPILD
Scaffold21, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30630.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1398_22
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19714..20064)
DNA (351bp) protein (117aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33); K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBT2_9SPHN
SCNpilot_expt_1000_bf_scaffold_1398_23
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20441..21622)
DNA (1182bp) protein (394aa)
HI0933-like protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NE31_9SPHN rbh
HI0933-like protein {ECO:0000313|EMBL:EAT09088.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
hypothetical protein; K07007 rbh
SCNpilot_expt_1000_bf_scaffold_1398_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21619..23253)
DNA (1635bp) protein (545aa)
Putative dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXI1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJP71468.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
FAD dependent oxidoreductase; K07137
SCNpilot_expt_1000_bf_scaffold_1398_25
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23294..24706)
DNA (1413bp) protein (471aa)
Cation/multidrug efflux pump AcrB n=1 Tax=Sphingomonas sp. LH128 RepID=J8VL20_9SPHN
Cation/multidrug efflux pump AcrB {ECO:0000313|EMBL:EJU13432.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
acriflavin resistance protein
SCNpilot_expt_1000_bf_scaffold_1398_26
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24919..25113
DNA (195bp) protein (65aa)
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
SCNpilot_expt_1000_bf_scaffold_1398_27
unknown

Not on your lists

25219..25326
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1398_28
unknown

Not on your lists

25336..25614
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1398_29
unknown

Not on your lists

25654..25944
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1398_30
unknown

Not on your lists

26092..26436
DNA (345bp) protein (115aa)

This feature has no annotations

Displaying items 1-30 of 117 in total

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