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SCNpilot_expt_1000_bf_scaffold_1460

Search features with annotation key words

Displaying items 1-30 of 131 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1460_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83..1474
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IW14_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AIT08369.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
binding-protein-dependent transport system protein rbh
SCNpilot_expt_1000_bf_scaffold_1460_2
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1491..2201
DNA (711bp) protein (237aa)
GumB n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B65022 rbh
DNA, contig: SP662 {ECO:0000313|EMBL:GAN15684.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
protein GumB rbh
SCNpilot_expt_1000_bf_scaffold_1460_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2214..4418
DNA (2205bp) protein (735aa)
protein-tyrosine kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B65913 rbh
Exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:AIT08367.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
exopolysaccharide biosynthesis protein rbh
SCNpilot_expt_1000_bf_scaffold_1460_4
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4425..5654
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K990_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB29973.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1460_5
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5651..6037
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IZI3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJR26927.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_expt_1000_bf_scaffold_1460_6
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6056..7072)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TQ18_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EMD83836.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
peptidase M48, Ste24p
SCNpilot_expt_1000_bf_scaffold_1460_7
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7425..7658
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HRU3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJR26938.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_expt_1000_bf_scaffold_1460_8
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8108..9022
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V8R2_SPHWW rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABQ68678.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_1460_9
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9056..10324
DNA (1269bp) protein (423aa)
L-carnitine dehydratase n=1 Tax=Sphingomonas wittichii RepID=UPI000304F3D1 rbh
L-carnitine dehydratase/bile acid-inducible protein F rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ABQ68677.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_1460_10
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10321..11247
DNA (927bp) protein (309aa)
pyruvate carboxyltransferase; K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] rbh
Pyruvate carboxyltransferase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V8R0_SPHWW rbh
Pyruvate carboxyltransferase {ECO:0000313|EMBL:ABQ68676.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_1460_11
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11244..12665
DNA (1422bp) protein (474aa)
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
isopropylmalate isomerase n=1 Tax=Sphingomonas wittichii RepID=UPI0002D263C1 rbh
SCNpilot_expt_1000_bf_scaffold_1460_12
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12667..13287
DNA (621bp) protein (207aa)
3-isopropylmalate dehydratase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
isopropylmalate isomerase n=1 Tax=Sphingomonas wittichii RepID=UPI0002F4B779
SCNpilot_expt_1000_bf_scaffold_1460_13
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13315..14529)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00037008C1 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJC56158.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
cytochrome P450 rbh
SCNpilot_expt_1000_bf_scaffold_1460_14
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14623..14955)
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Streptomyces sp. e14 RepID=D6KDI7_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:AKH98829.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1460_15
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

15117..16019
DNA (903bp) protein (301aa)
echA; enoyl-CoA hydratase (EC:4.2.1.17)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI0003695A76
Tax=RBG_16_RIF_CHLX_72_14_curated
SCNpilot_expt_1000_bf_scaffold_1460_16
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16012..16692
DNA (681bp) protein (227aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T173_ACIDE
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EER61817.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1460_17
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16782..18434)
DNA (1653bp) protein (551aa)
dhbE; cyclohexanecarboxylate-CoA ligase (EC:5.1.1.11); K04116 cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-] rbh
2,3-dihydroxybenzoate-AMP ligase {ECO:0000313|EMBL:CAJ58867.1}; EC=5.1.1.11 {ECO:0000313|EMBL:CAJ58867.1};; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI00038169E0 rbh
SCNpilot_expt_1000_bf_scaffold_1460_18
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18427..19620)
DNA (1194bp) protein (398aa)
Cytochrome P450 superfamily protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX70_9GAMM rbh
Cytochrome P450 superfamily protein {ECO:0000313|EMBL:EEB78851.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
cytochrome P450
SCNpilot_expt_1000_bf_scaffold_1460_19
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19717..20067)
DNA (351bp) protein (117aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WTJ4_9BURK
AMP-dependent synthetase {ECO:0000313|EMBL:KFI29562.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
AMP-dependent synthetase and ligase
SCNpilot_expt_1000_bf_scaffold_1460_20
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20125..20307)
DNA (183bp) protein (61aa)
O-succinylbenzoate--CoA ligase n=1 Tax=Mycobacterium rhodesiae JS60 RepID=G4I7M7_MYCRH
AMP-dependent synthetase {ECO:0000313|EMBL:KJC55899.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
feruloyl-CoA synthetase
SCNpilot_expt_1000_bf_scaffold_1460_21
Mycobacterium vanbaalenii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20273..20713)
DNA (441bp) protein (147aa)
AMP-dependent synthetase and ligase n=1 Tax=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) RepID=A1TEZ0_MYCVP
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABM15740.1}; TaxID=350058 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1).;"
SCNpilot_expt_1000_bf_scaffold_1460_22
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21209..22384)
DNA (1176bp) protein (392aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F1P3_SPHCR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEG51459.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_1460_23
Sphingomonas sp. NS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22559..23458
DNA (900bp) protein (300aa)
putative LuxR family transcriptional regulator n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0A50
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:AJW29379.1}; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
regulatory protein LuxR
SCNpilot_expt_1000_bf_scaffold_1460_24
unknown

Not on your lists

comp(23382..23714)
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1460_25
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23711..25336)
DNA (1626bp) protein (542aa)
alpha/beta hydrolase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489FB2
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:AGH50895.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_1460_26
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25333..26535)
DNA (1203bp) protein (401aa)
Aminoglycoside phosphotransferase n=1 Tax=Mycobacterium rhodesiae JS60 RepID=G4HYX3_MYCRH
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48428.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1460_27
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26532..27329)
DNA (798bp) protein (266aa)
AMP-dependent synthetase n=1 Tax=Amycolatopsis methanolica RepID=UPI000365CEB0
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:AIJ25567.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
long-chain-fatty-acid--CoA ligase
SCNpilot_expt_1000_bf_scaffold_1460_28
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(27278..28270)
DNA (993bp) protein (331aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:KJF16660.1}; EC=6.2.1.3 {ECO:0000313|EMBL:KJF16660.1};; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
Long-chain-fatty-acid--CoA ligase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CWT0_PSEUX
long-chain-fatty-acid--CoA ligase
SCNpilot_expt_1000_bf_scaffold_1460_29
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28521..30827
DNA (2307bp) protein (769aa)
Outer membrane protein n=1 Tax=Luminiphilus syltensis NOR5-1B RepID=B8KXQ7_9GAMM rbh
TonB-dependent receptor {ECO:0000313|EMBL:KEQ53903.1}; Flags: Precursor;; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
TonB-dependent receptor rbh
SCNpilot_expt_1000_bf_scaffold_1460_30
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30862..33036
DNA (2175bp) protein (725aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00037C6CD8
Uncharacterized protein {ECO:0000313|EMBL:KJS08071.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
oxidoreductase rbh
Displaying items 1-30 of 131 in total

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