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SCNpilot_expt_1000_bf_scaffold_1576

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1576_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..142
DNA (141bp) protein (47aa)
parB partition protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E0639
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1576_2
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139..672
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C0AB2
Transposase {ECO:0000313|EMBL:AJP47690.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1576_3
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

669..1172
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743BE1
Peptidase {ECO:0000313|EMBL:AJP47689.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
putative conjugal transfer TRAF transmembrane protein
SCNpilot_expt_1000_bf_scaffold_1576_4
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1492..3441
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUX8_POLNA
Type VI secretion protein {ECO:0000313|EMBL:AJP47688.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1576_5
unknown

Not on your lists

3478..3732
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1576_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3729..4262
DNA (534bp) protein (178aa)
sigma-70 family RNA polymerase sigma factor id=12498535 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sigma-70 family RNA polymerase sigma factor
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1576_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4354..5409
DNA (1056bp) protein (352aa)
permease; K07089 id=12498536 bin=THIO_MID species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
permease rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1576_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5421..5717
DNA (297bp) protein (99aa)
thiol-disulfide isomerase id=12498539 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase and thioredoxins family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1576_9
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

6137..6898
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UV18_ROSS1 rbh
hypothetical protein; K07090 rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ90471.1}; Flags: Precursor;; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
SCNpilot_expt_1000_bf_scaffold_1576_10
unknown

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comp(7173..8162)
DNA (990bp) protein (330aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1576_11
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8331..8804
DNA (474bp) protein (158aa)
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23383.1}; EC=1.20.9.1 {ECO:0000313|EMBL:AJG23383.1};; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
twin-arginine translocation pathway signal protein (EC:1.20.98.1); K08355 arsenite oxidase small subunit [EC:1.20.9.1]
Arsenite oxidase Rieske subunit n=1 Tax=Pseudomonas stutzeri TS44 RepID=B7SKG1_PSEST
SCNpilot_expt_1000_bf_scaffold_1576_12
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8821..11118
DNA (2298bp) protein (766aa)
Arsenite oxidase large subunit {ECO:0000313|EMBL:CCV04584.1}; EC=1.20.9.1 {ECO:0000313|EMBL:CCV04584.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein n=1 Tax=Bacillus sp. ZYK RepID=UPI0002F7FEC4
narB; nitrate reductase
SCNpilot_expt_1000_bf_scaffold_1576_13

Not on your lists

11215..12312
DNA (1098bp) protein (366aa)
Porin, Gram-negative type n=1 Tax=mine drainage metagenome RepID=E6QQ82_9ZZZZ rbh
Porin, Gram-negative type {ECO:0000313|EMBL:CBI09403.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
porin rbh
SCNpilot_expt_1000_bf_scaffold_1576_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12773..13528
DNA (756bp) protein (252aa)
Transposase, TnpA family n=1 Tax=Rhodanobacter denitrificans RepID=M4NGM8_9GAMM
transposase, TnpA family
Transposase, TnpA family {ECO:0000313|EMBL:AGG88813.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1576_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13528..14433
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUZ6_POLNA
LysR family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1576_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14469..14717
DNA (249bp) protein (83aa)
Lipoprotein n=1 Tax=mine drainage metagenome RepID=T1CDB9_9ZZZZ
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1576_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14997..15218
DNA (222bp) protein (74aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2DJW9_9BACT
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 17 items

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