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SCNpilot_expt_1000_bf_scaffold_1578

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1578_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31..567)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA42_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25281.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_1578_2
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(571..1332)
DNA (762bp) protein (254aa)
Molybdopterin binding domain-containing protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E8X5_9SPHN rbh
Molybdopterin binding domain-containing protein {ECO:0000313|EMBL:EHJ62199.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
molybdopterin binding domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_1578_3
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1520..2524)
DNA (1005bp) protein (335aa)
Flavin-containing monooxygenase FMO n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMR8_9SPHN
FAD-containing monooxygenase EthA {ECO:0000313|EMBL:KHK93628.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
flavin-containing monooxygenase FMO
SCNpilot_expt_1000_bf_scaffold_1578_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2911..3993
DNA (1083bp) protein (361aa)
Mg2+ transporter protein, CorA-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA37_NOVAD rbh
Magnesium and cobalt transport protein corA {ECO:0000313|EMBL:GAO54608.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
CorA-like Mg2+ transporter protein; K03284 magnesium transporter rbh
SCNpilot_expt_1000_bf_scaffold_1578_5
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4168..4818
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA36_NOVAD
Putative phosphate transport regulator {ECO:0000313|EMBL:KHS48858.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein; K07220 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1578_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4833..5831
DNA (999bp) protein (333aa)
Phosphate transporter n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA35_NOVAD rbh
Low-affinity inorganic phosphate transporter {ECO:0000313|EMBL:GAO54605.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphate transporter; K03306 inorganic phosphate transporter, PiT family rbh
SCNpilot_expt_1000_bf_scaffold_1578_7
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5902..6348)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Frankia sp. EUN1f RepID=D3CR67_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFC86814.1}; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1578_8
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6345..6884)
DNA (540bp) protein (180aa)
Polyketide cyclase / dehydrase and lipid transport n=1 Tax=Novosphingobium sp. AP12 RepID=J3AHT3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK90573.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1578_9
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6894..7010)
DNA (117bp) protein (39aa)
Succinate dehydrogenase/fumarate reductase flavoprotein subunit n=1 Tax=Novosphingobium sp. AP12 RepID=J2PWB7_9SPHN
Succinate dehydrogenase/fumarate reductase flavoprotein subunit {ECO:0000313|EMBL:EJL32037.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_1578_10
unknown

Not on your lists

7454..8608
DNA (1155bp) protein (385aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1578_11
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8667..10658)
DNA (1992bp) protein (664aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4X9_NOVAD rbh
diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ABD27094.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_1578_12
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10897..12291)
DNA (1395bp) protein (465aa)
rimO; ribosomal protein S12 methylthiotransferase; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-]
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000255|HAMAP-Rule:MF_01865}; Short=S12 MTTase {ECO:0000255|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000255|HAMAP-Rule:MF_01865};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000255|HAMAP-Rule:MF_01865}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomon
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RIMO_NOVAD
SCNpilot_expt_1000_bf_scaffold_1578_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12356..12766
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y831_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54599.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1578_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12772..13809)
DNA (1038bp) protein (346aa)
Putative potassium channel protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLT0_9SPHN rbh
Putative potassium channel protein {ECO:0000313|EMBL:GAD49352.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1578_15
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13809..14594)
DNA (786bp) protein (262aa)
Membrane protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMS2_9SPHN
membrane protein
Membrane protein {ECO:0000313|EMBL:CCA92724.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_1578_16
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14591..15355)
DNA (765bp) protein (255aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
5'-nucleotidase (EC:3.1.3.5); K03787 5'-nucleotidase [EC:3.1.3.5] rbh
5'-nucleotidase SurE n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C519_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_1578_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15446..16723)
DNA (1278bp) protein (426aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] rbh
seryl-tRNA synthetase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B79345 rbh
SCNpilot_expt_1000_bf_scaffold_1578_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16816..17016)
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DIM5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAO54595.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1578_19
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17123..17659)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKD0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48742.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_1578_20
Rhodococcus phage E3, Caudovirales, Viruses

Not on your lists

comp(17659..18444)
DNA (786bp) protein (262aa)
Putative tail fiber protein n=1 Tax=Rhodococcus phage E3 RepID=M9MUU1_9CAUD
Putative tail fiber protein {ECO:0000313|EMBL:AEQ21001.1}; TaxID=1007869 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Rhodococcus phage E3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1578_21
unknown

Not on your lists

comp(18457..18831)
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1578_22
unknown

Not on your lists

comp(18828..19181)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1578_23
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19516..19803
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8S821_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK93040.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1578_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19873..20613)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLU8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49382.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1578_25
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20716..22092
DNA (1377bp) protein (459aa)
GTPase Der n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=DER_NOVAD rbh
engA; GTP-binding protein EngA; K03977 GTP-binding protein rbh
GTPase Der {ECO:0000255|HAMAP-Rule:MF_00195}; GTP-binding protein EngA {ECO:0000255|HAMAP-Rule:MF_00195}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_1578_26
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22444..22923)
DNA (480bp) protein (160aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
Bacterioferritin n=1 Tax=Sphingomonas sp. LH128 RepID=J8VZ83_9SPHN
bacterioferritin; K03594 bacterioferritin
SCNpilot_expt_1000_bf_scaffold_1578_27
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23101..23295)
DNA (195bp) protein (65aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E8P6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ62120.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein; K02192 bacterioferritin-associated ferredoxin
SCNpilot_expt_1000_bf_scaffold_1578_28
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23352..24548)
DNA (1197bp) protein (399aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E8P5_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EHJ62119.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein; K07148 uncharacterized protein rbh
SCNpilot_expt_1000_bf_scaffold_1578_29
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24559..25725)
DNA (1167bp) protein (389aa)
Sporulation related protein,Sel1 repeat protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3A3X2_9SPHN rbh
Sporulation protein {ECO:0000313|EMBL:KHK93621.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1578_30
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26482..26685
DNA (204bp) protein (68aa)
ParA-like protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3P9_9SPHN
ParA-like protein {ECO:0000313|EMBL:GAD49368.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
chromosome partitioning protein; K03496 chromosome partitioning protein
Displaying items 1-30 of 53 in total

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