ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1927

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1927_1
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..551)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Xanthomonas sacchari RepID=UPI0002630229
Uncharacterized protein {ECO:0000313|EMBL:ELQ16124.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1927_2

Not on your lists

comp(542..1120)
DNA (579bp) protein (193aa)
Lipocalin family protein n=1 Tax=mine drainage metagenome RepID=T0ZU49_9ZZZZ
Lipocalin family protein {ECO:0000313|EMBL:EQD33425.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
bacterial lipocalin
SCNpilot_expt_1000_bf_scaffold_1927_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1728..2837)
DNA (1110bp) protein (370aa)
Catalase-related peroxidase {ECO:0000256|PIRNR:PIRNR000296}; EC=1.11.1.- {ECO:0000256|PIRNR:PIRNR000296};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
srpA; catalase; K03781 catalase [EC:1.11.1.6]
Catalase-related peroxidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXQ7_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1927_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3084..3605)
DNA (522bp) protein (174aa)
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphatidylglycerophosphatase A-like protein (EC:3.1.3.27)
Phosphatidylglycerophosphatase A n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ92_9GAMM
SCNpilot_expt_1000_bf_scaffold_1927_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3602..4570)
DNA (969bp) protein (323aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Thiamine-monophosphate kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ93_9GAMM rbh
thiamine-phosphate kinase rbh
SCNpilot_expt_1000_bf_scaffold_1927_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4601..5146)
DNA (546bp) protein (182aa)
N-acetyltransferase GCN5 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VTP1_9GAMM
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EIL90582.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_1927_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5146..5592)
DNA (447bp) protein (149aa)
N utilization substance protein B homolog n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ95_9GAMM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcription antitermination factor NusB
SCNpilot_expt_1000_bf_scaffold_1927_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5589..6053)
DNA (465bp) protein (155aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.78)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ96_9GAMM
SCNpilot_expt_1000_bf_scaffold_1927_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6093..7043)
DNA (951bp) protein (317aa)
L,D-carboxypeptidase A {ECO:0000313|EMBL:EIL90585.1}; EC=3.4.17.13 {ECO:0000313|EMBL:EIL90585.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13)
L,D-carboxypeptidase A n=1 Tax=Rhodanobacter sp. 115 RepID=I4VTP4_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1927_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7144..7413)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJD1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99572.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1927_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7527..9275
DNA (1749bp) protein (583aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18) rbh
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Glutamine--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJC5_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_1927_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9286..9846
DNA (561bp) protein (187aa)
Zinc-binding CMP/dCMP deaminase protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYP0_9GAMM rbh
Zinc-binding CMP/dCMP deaminase protein {ECO:0000313|EMBL:EIL92331.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytosine/adenosine deaminase rbh
SCNpilot_expt_1000_bf_scaffold_1927_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9843..10553
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYN9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL92330.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1927_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10680..12578
DNA (1899bp) protein (633aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Integral membrane sensor hybrid histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZG3_9GAMM rbh
signal transduction histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_1927_15
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13370..14422)
DNA (1053bp) protein (351aa)
PBSX family phage portal protein n=1 Tax=Acidovorax radicis RepID=UPI0002376DE6 rbh
PBSX family phage portal protein rbh
Phage portal protein, PBSX family {ECO:0000313|EMBL:ABM38586.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_expt_1000_bf_scaffold_1927_16
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14422..15906)
DNA (1485bp) protein (495aa)
Uncharacterized protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AIP3_COLFT rbh
DNA-dependent ATPase terminase subunit {ECO:0000313|EMBL:EZP41423.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1927_17
Oxalobacter formigenes, Oxalobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15912..16151)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X200_OXAFO
Uncharacterized protein {ECO:0000313|EMBL:EEO27236.1}; TaxID=556268 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Oxalobacter.;" source="Oxalobacter formigenes HOxBLS.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1927_18
Burkholderia sp. CCGE1001, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16299..17159
DNA (861bp) protein (287aa)
Capsid scaffolding n=1 Tax=Burkholderia sp. CCGE1001 RepID=E8YIL9_9BURK
capsid scaffolding
Capsid scaffolding {ECO:0000313|EMBL:ADX56869.1}; Flags: Precursor;; TaxID=640510 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. CCGE1001.;"
SCNpilot_expt_1000_bf_scaffold_1927_19
Shewanella baltica, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17237..18259
DNA (1023bp) protein (341aa)
Phage major capsid protein, P2 family n=1 Tax=Shewanella baltica (strain OS678) RepID=E6T4S9_SHEB6 rbh
phage major capsid protein, P2 family rbh
Phage major capsid protein, P2 family {ECO:0000313|EMBL:ABX50080.1}; TaxID=399599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella baltica (strain OS195).;"
SCNpilot_expt_1000_bf_scaffold_1927_20
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18344..19012
DNA (669bp) protein (223aa)
Phage small terminase subunit n=1 Tax=Burkholderia multivorans CF2 RepID=J4RXP7_9BURK
Phage small terminase subunit {ECO:0000313|EMBL:EJO52502.1}; TaxID=985078 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CF2.;"
small terminase subunit
SCNpilot_expt_1000_bf_scaffold_1927_21
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19111..19575
DNA (465bp) protein (155aa)
Phage-related capsid completion protein n=1 Tax=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) RepID=Q2P517_XANOM
Head completion protein {ECO:0000313|EMBL:EWC51480.1}; TaxID=1401257 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. glycines str. 8ra.;"
phage-related capsid completion protein
SCNpilot_expt_1000_bf_scaffold_1927_22
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19575..19784
DNA (210bp) protein (70aa)
Bacteriophage protein n=1 Tax=Ralstonia solanacearum SD54 RepID=V5CCF7_RALSL
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG19131.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
bacteriophage protein
SCNpilot_expt_1000_bf_scaffold_1927_23
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19799..20161
DNA (363bp) protein (121aa)
membrane protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A35FB
Phage-related protein {ECO:0000313|EMBL:AIY42984.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
phage-like protein
SCNpilot_expt_1000_bf_scaffold_1927_24
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20161..20469
DNA (309bp) protein (103aa)
Uncharacterized protein n=130 Tax=Pseudomonas RepID=G4LPH1_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:AIY42985.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1927_25
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20438..21247
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A35F9
KY49.ctg7180000000022_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP15131.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
putative phage-encoded peptidoglycan binding protein
SCNpilot_expt_1000_bf_scaffold_1927_26
unknown

Not on your lists

21244..21360
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1927_27
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21357..21848
DNA (492bp) protein (164aa)
Phage related protein; putative exported protein n=1 Tax=Ralstonia solanacearum K60-1 RepID=H5W7S0_RALSL
Phage related protein; putative exported protein {ECO:0000313|EMBL:CCF95841.1}; TaxID=1091042 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum K60-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1927_28
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21845..22327
DNA (483bp) protein (161aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8FBP5_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACO79895.1}; TaxID=322710 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
SCNpilot_expt_1000_bf_scaffold_1927_29
Chromohalobacter salexigens, Chromohalobacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22327..22782
DNA (456bp) protein (152aa)
Phage virion morphogenesis (Putative tail completion) protein n=1 Tax=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) RepID=Q1QXR4_CHRSD
phage virion morphogenesis (putative tail completion) protein
Phage virion morphogenesis (Putative tail completion) protein {ECO:0000313|EMBL:ABE58744.1}; TaxID=290398 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Chromohalobacter.;" source="Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB; 13768).;"
SCNpilot_expt_1000_bf_scaffold_1927_30
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22772..23506)
DNA (735bp) protein (245aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1444770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa PLS229.;"
site-specific DNA-methyltransferase; K07319 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72] rbh
Site-specific DNA-methyltransferase n=1 Tax=Xylella fastidiosa (strain 9a5c) RepID=Q9PB32_XYLFA rbh
Displaying items 1-30 of 75 in total

View Taxonomy