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SCNpilot_expt_1000_bf_scaffold_1973

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1973_1
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..612)
DNA (612bp) protein (204aa)
taurine catabolism dioxygenase TauD/TfdA; K03119 taurine dioxygenase [EC:1.14.11.17]
Putative taurine catabolism dioxygenase n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q2C5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK90959.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_1973_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(737..2407)
DNA (1671bp) protein (557aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] rbh
2-isopropylmalate synthase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AAN0_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_1973_3
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3235..3816
DNA (582bp) protein (194aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Novosphingobium sp. AP12 RepID=J2GGC9_9SPHN
Epoxide hydrolase {ECO:0000313|EMBL:KHK91232.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
epoxide hydrolase-like protein
SCNpilot_expt_1000_bf_scaffold_1973_4
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3958..4575)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H7U6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO40814.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1973_5
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4575..4898)
DNA (324bp) protein (108aa)
Lipoprotein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VYU4_9SPHN
Lipoprotein {ECO:0000313|EMBL:EJU12616.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1973_6
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4947..5966)
DNA (1020bp) protein (340aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86] rbh
Ketol-acid reductoisomerase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPA6_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_1973_7
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6117..6635)
DNA (519bp) protein (173aa)
acetolactate synthase I/III small subunit (EC:2.2.1.6); K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
Acetolactate synthase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HAC8_9SPHN
Acetolactate synthase I/III small subunit {ECO:0000313|EMBL:EHJ62986.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_1973_8
unknown

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comp(6645..6914)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1973_9
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6914..8698)
DNA (1785bp) protein (595aa)
acetolactate synthase I/II/III large subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591, ECO:0000313|EMBL:CCA93260.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Acetolactate synthase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPA8_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_1973_10
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8783..9754)
DNA (972bp) protein (324aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;
tRNA dimethylallyltransferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] rbh
tRNA dimethylallyltransferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VNS0_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_1973_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9831..10631
DNA (801bp) protein (267aa)
Phosphoserine phosphatase {ECO:0000313|EMBL:GAO56500.1}; EC=3.1.3.3 {ECO:0000313|EMBL:GAO56500.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphoserine phosphatase (EC:3.1.3.3); K01079 phosphoserine phosphatase [EC:3.1.3.3]
Phosphoserine phosphatase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y9A8_9SPHN
SCNpilot_expt_1000_bf_scaffold_1973_12
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10713..11066)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI000360E3ED
Uncharacterized protein {ECO:0000313|EMBL:KHK92016.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1973_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11144..13357)
DNA (2214bp) protein (738aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacter
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] rbh
Phosphoribosylformylglycinamidine synthase 2 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8W1_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_1973_14
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13481..13705
DNA (225bp) protein (75aa)
exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HAC4_9SPHN
SCNpilot_expt_1000_bf_scaffold_1973_15
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13708..14616
DNA (909bp) protein (303aa)
geranyltranstransferase (EC:2.5.1.10); K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] rbh
Geranyltranstransferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VP27_9SPHN rbh
Geranyltranstransferase {ECO:0000313|EMBL:EZP84905.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_1000_bf_scaffold_1973_16
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14618..15181
DNA (564bp) protein (188aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
Phosphopantetheine adenylyltransferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VY67_9SPHN
SCNpilot_expt_1000_bf_scaffold_1973_17
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15225..15986
DNA (762bp) protein (254aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L5A4_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_1973_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16027..17046
DNA (1020bp) protein (340aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZWY0_9SPHN
SCNpilot_expt_1000_bf_scaffold_1973_19
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17038..18363)
DNA (1326bp) protein (442aa)
Magnesium transporter n=1 Tax=Sphingomonas sp. S17 RepID=F3WSJ2_9SPHN rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
Mg++ transporter
SCNpilot_expt_1000_bf_scaffold_1973_20
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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18646..19602
DNA (957bp) protein (319aa)
ABC transporter ATP-binding protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8A8_9SPHN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EDL50559.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
ABC transporter ATP-binding protein; K09687 antibiotic transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1973_21
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19599..20372
DNA (774bp) protein (258aa)
Putative ABC transporter permease protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMZ0_9SPHN rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ABC transporter permease rbh
SCNpilot_expt_1000_bf_scaffold_1973_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20362..21117)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G638_NOVAD rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO55569.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein; K07090 rbh
SCNpilot_expt_1000_bf_scaffold_1973_23
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21165..21587)
DNA (423bp) protein (141aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS07972.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
SCNpilot_expt_1000_bf_scaffold_1973_24
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21740..22192
DNA (453bp) protein (151aa)
queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
Queuine tRNA-ribosyltransferase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6S7_9SPHN
Displaying 24 items

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