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SCNpilot_expt_1000_bf_scaffold_11341

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11341_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1629)
DNA (1629bp) protein (543aa)
Double-strand break repair protein AddB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A0V4_9SPHN
Double-strand break repair protein AddB {ECO:0000313|EMBL:GAD48383.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
helicase
SCNpilot_expt_1000_bf_scaffold_11341_2
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1622..2344)
DNA (723bp) protein (241aa)
mannose-1-phosphate guanylyltransferase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002F70A8D
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:KEO86979.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11341_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2361..3707)
DNA (1347bp) protein (449aa)
Putative phosphotransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJ28_9SPHN
Phosphotransferase enzyme family protein {ECO:0000313|EMBL:AKH41762.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
aminoglycoside phosphotransferase; K07102
SCNpilot_expt_1000_bf_scaffold_11341_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3718..4263)
DNA (546bp) protein (182aa)
Sensor protein DivL {ECO:0000313|EMBL:AKH41764.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AKH41764.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-)
Putative two-component histidine kinase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJM2_9SPHN
SCNpilot_expt_1000_bf_scaffold_11341_5
unknown

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4989..6101
DNA (1113bp) protein (371aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11341_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6176..6655
DNA (480bp) protein (160aa)
Alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IG56_9SPHN
Peroxiredoxin {ECO:0000313|EMBL:GAO55988.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alkyl hydroperoxide reductase
SCNpilot_expt_1000_bf_scaffold_11341_7
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6706..7305)
DNA (600bp) protein (200aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
GTP cyclohydrolase (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase 1 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJ30_9SPHN
SCNpilot_expt_1000_bf_scaffold_11341_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7419..7907)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6T2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41770.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11341_9
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9544..10101)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XLP4_9CHRO
protein of unknown function DUF305
Tax=BJP_IG2069_Desfulfarculales_53_13
SCNpilot_expt_1000_bf_scaffold_11341_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10121..10405)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00035C3A73
Sphingomonas taxi strain 30a NODE_51, whole genome shotgun sequence {ECO:0000313|EMBL:KIU25904.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
putative metal-binding protein
SCNpilot_expt_1000_bf_scaffold_11341_11
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10402..10548)
DNA (147bp) protein (49aa)
UPI0003D593F8 related cluster n=1 Tax=unknown RepID=UPI0003D593F8
Metal-binding protein {ECO:0000313|EMBL:ETI65496.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
SCNpilot_expt_1000_bf_scaffold_11341_12
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10608..10808)
DNA (201bp) protein (67aa)
copper resistance protein CopB n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C50A
Uncharacterized protein {ECO:0000313|EMBL:EJK82632.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
copper resistance B; K07233 copper resistance protein B
SCNpilot_expt_1000_bf_scaffold_11341_13
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11650..12204)
DNA (555bp) protein (185aa)
UPI0003D5A74C related cluster n=1 Tax=unknown RepID=UPI0003D5A74C
Copper-binding protein {ECO:0000313|EMBL:ETI65494.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
putative multicopper oxidase
SCNpilot_expt_1000_bf_scaffold_11341_14
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12201..12746)
DNA (546bp) protein (182aa)
CopA family copper-resistance protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D0L4_SPHYA
Putative multicopper oxidase {ECO:0000313|EMBL:KHS45212.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
putative multicopper oxidase
Displaying 14 items

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