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SCNpilot_expt_1000_bf_scaffold_11435

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11435_1
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..835
DNA (834bp) protein (278aa)
UPI0003D66767 related cluster n=1 Tax=unknown RepID=UPI0003D66767 rbh
Magnesium transporter CorA {ECO:0000313|EMBL:AHE52115.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
CorA family protein Mg2+ transporter protein; K16074 zinc transporter rbh
SCNpilot_expt_1000_bf_scaffold_11435_2
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1022..1237)
DNA (216bp) protein (72aa)
Polyphosphate kinase 2, PA0141 family n=1 Tax=Sphingobium sp. AP49 RepID=J2CVA6_9SPHN
Polyphosphate kinase 2, PA0141 family {ECO:0000313|EMBL:EJK81049.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11435_3
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1710..1922)
DNA (213bp) protein (71aa)
Polyphosphate kinase 2, PA0141 family n=1 Tax=Sphingobium sp. AP49 RepID=J2CVA6_9SPHN
Polyphosphate kinase 2, PA0141 family {ECO:0000313|EMBL:EJK81049.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11435_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2154..2774)
DNA (621bp) protein (207aa)
hypothetical protein; K07284 sortase A [EC:3.4.22.70]
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3W9L8_9SPHN
LPXTG-site transpeptidase family protein {ECO:0000313|EMBL:GAO54159.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_expt_1000_bf_scaffold_11435_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2771..3445)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZ77_9SPHN
Inter-alpha-trypsin inhibitor domain protein {ECO:0000313|EMBL:GAO54160.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cell wall anchor domain-containing protein; K07114 uncharacterized protein
SCNpilot_expt_1000_bf_scaffold_11435_6
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5074..5784
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3W9M0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAQ29174.1}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11435_7
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5838..6368)
DNA (531bp) protein (177aa)
Putative uncharacterized protein n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8L1L1_FRASN
Uncharacterized protein {ECO:0000313|EMBL:KHK90739.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11435_8
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6365..7279)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZWK0_9SPHN rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:KHK89444.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_11435_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7305..8177)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D6B7_SPHYA rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU74452.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_11435_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8368..9378
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D685_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU74402.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
luciferase-like monooxygenase
SCNpilot_expt_1000_bf_scaffold_11435_11
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9389..9703
DNA (315bp) protein (105aa)
IclR family transcriptional regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8SKK8_9SPHN
IclR family transcriptional regulator {ECO:0000313|EMBL:EZP73885.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_11435_12
unknown

Not on your lists

10645..10764
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11435_13
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10997..11956)
DNA (960bp) protein (320aa)
Putative flavoprotein involved in K+ transport n=1 Tax=Novosphingobium sp. AP12 RepID=J2G0G7_9SPHN
Monooxygenase {ECO:0000313|EMBL:KHK89443.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
cyclododecanone monooxygenase
SCNpilot_expt_1000_bf_scaffold_11435_14
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12172..13545)
DNA (1374bp) protein (458aa)
Rieske (2Fe-2S) domain-containing protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VWQ4_9SPHN rbh
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:EJU11841.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
Rieske (2Fe-2S) domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_11435_15
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13605..14372)
DNA (768bp) protein (256aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Sphingomonas sp. LH128 RepID=J8SPG5_9SPHN rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EZP81559.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
enoyl-CoA hydratase/isomerase rbh
SCNpilot_expt_1000_bf_scaffold_11435_16
unknown

Not on your lists

comp(14372..14446)
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 16 items

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