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SCNpilot_expt_1000_bf_scaffold_3209

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3209_1
unknown

Not on your lists

comp(43..459)
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3209_2
unknown

Not on your lists

comp(441..641)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3209_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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805..2055
DNA (1251bp) protein (417aa)
2-chlorobenzoate 1,2-dioxygenase; K05549 benzoate/toluate 1,2-dioxygenase alpha subunit [EC:1.14.12.10 1.14.12.-]
2-chlorobenzoate 1,2-dioxygenase {ECO:0000313|EMBL:AEA26449.1}; EC=1.14.12.13 {ECO:0000313|EMBL:AEA26449.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
2-chlorobenzoate 1,2-dioxygenase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CW35_PSEUX
SCNpilot_expt_1000_bf_scaffold_3209_4
Thermus thermophilus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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2052..2549
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI000366690D
small subunit of phenylpropionate dioxygenase
Small subunit of phenylpropionate dioxygenase {ECO:0000313|EMBL:AFH40261.1}; TaxID=798128 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus thermophilus JL-18.;"
SCNpilot_expt_1000_bf_scaffold_3209_5
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2561..3466
DNA (906bp) protein (302aa)
hypothetical protein; K05714 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase [EC:3.7.1.-]
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YAD2_9BRAD
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EHR00275.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_expt_1000_bf_scaffold_3209_6
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3459..4322
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI00035DD64E
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR66296.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_3209_7
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4319..6025
DNA (1707bp) protein (569aa)
Putative acetyl-CoA synthetase {ECO:0000313|EMBL:CCG40667.1}; EC=6.2.1.26 {ECO:0000313|EMBL:CCG40667.1};; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
putative o-succinylbenzoate-CoA ligase protein (acs) (EC:6.2.1.26)
Putative acetyl-CoA synthetase n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FQM9_PHAMO rbh
SCNpilot_expt_1000_bf_scaffold_3209_8
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6022..6864
DNA (843bp) protein (281aa)
alpha/beta hydrolase fold protein; K10702 2-hydroxy-6-oxohepta-2,4-dienoate hydroxylase [EC:3.7.1.-]
1,2-hydroxymuconic semialdehyde hydrolase n=1 Tax=gamma proteobacterium BDW918 RepID=I2JQ55_9GAMM rbh
1,2-hydroxymuconic semialdehyde hydrolase {ECO:0000313|EMBL:EIF45107.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
SCNpilot_expt_1000_bf_scaffold_3209_9
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6861..7664
DNA (804bp) protein (268aa)
short-chain dehydrogenase/reductase SDR; K10620 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase [EC:1.3.1.58]
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI00036B89FB
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ENO87804.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
SCNpilot_expt_1000_bf_scaffold_3209_10
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7652..8455
DNA (804bp) protein (268aa)
4-oxalocrotonate decarboxylase (EC:4.1.1.77)
4-oxalocrotonate decarboxylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W825_9SPHN
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_1000_bf_scaffold_3209_11
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8461..8991
DNA (531bp) protein (177aa)
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
Acetaldehyde dehydrogenase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZD17_9SPHN
SCNpilot_expt_1000_bf_scaffold_3209_12
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9120..9383
DNA (264bp) protein (88aa)
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042125};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
Acetaldehyde dehydrogenase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZD17_9SPHN
SCNpilot_expt_1000_bf_scaffold_3209_13
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9380..10465
DNA (1086bp) protein (362aa)
4-hydroxy-2-ketovalerate aldolase; K01666 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
4-hydroxy-2-oxovalerate aldolase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UN48_9SPHN
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_1000_bf_scaffold_3209_14
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10512..10715)
DNA (204bp) protein (68aa)
transcriptional regulator n=1 Tax=Sphingomonas wittichii RepID=UPI0003766087
Transcriptional regulator {ECO:0000313|EMBL:KKC26034.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3209_15
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10891..11763
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GIP5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL22438.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_3209_16
Roseibacterium elongatum, Roseibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11808..13259)
DNA (1452bp) protein (484aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI00035C81AD rbh
Phage uncharacterized protein {ECO:0000313|EMBL:AHM04460.1}; TaxID=1294273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibacterium.;" source="Roseibacterium elongatum DSM 19469.;"
phage protein rbh
SCNpilot_expt_1000_bf_scaffold_3209_17
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13262..13933)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B5A2B0
Uncharacterized protein {ECO:0000313|EMBL:KHK90037.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3209_18
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14001..15392)
DNA (1392bp) protein (464aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
DNA methylase N-4 n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B513D7 rbh
DNA methylase N-4/N-6 domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_3209_19
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15807..16100
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GBR9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA97477.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3209_20
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16085..16588
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI000369F117
GCN5-like N-acetyltransferase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
Displaying 20 items

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