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SCNpilot_expt_1000_bf_scaffold_3288

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3288_1
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..568
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Nocardia sp. 348MFTsu5.1 RepID=UPI00037501AD
Uncharacterized protein {ECO:0000313|EMBL:KHK90187.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
dihydrodipicolinate reductase
SCNpilot_expt_1000_bf_scaffold_3288_2
unknown

Not on your lists

623..1030
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3288_3
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1137..1574
DNA (438bp) protein (146aa)
Glutathione-dependent formaldehyde-activating, GFA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7A8_NOVAD
glutathione-dependent formaldehyde-activating protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_3288_4
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1613..1816
DNA (204bp) protein (68aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
xylose isomerase (EC:5.3.1.5); K01805 xylose isomerase [EC:5.3.1.5]
UPI0003CFD755 related cluster n=1 Tax=unknown RepID=UPI0003CFD755
SCNpilot_expt_1000_bf_scaffold_3288_5
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1842..2537)
DNA (696bp) protein (232aa)
Transcriptional regulator n=1 Tax=Novosphingobium sp. AP12 RepID=J2GE33_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EJL20698.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3288_6
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2570..3040)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Frankia sp. CN3 RepID=G6H3X6_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP84535.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_expt_1000_bf_scaffold_3288_7
Mycobacterium farcinogenes, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3056..4396)
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Rhodococcus rhodochrous RepID=UPI0002DABEA3 rbh
Dioxygenase {ECO:0000313|EMBL:CDP82335.1}; TaxID=1802 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium farcinogenes.;"
Rieske (2Fe-2S) domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_3288_8
unknown

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4715..4945
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3288_9
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4942..5292
DNA (351bp) protein (117aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S206_9SPHN
RNA polymerase ECF-type sigma factor
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:AGH50030.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_3288_10
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5660..6343
DNA (684bp) protein (228aa)
Transcriptional regulator, putative n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UKH4_9RHOB
Transcriptional regulator, putative {ECO:0000313|EMBL:EAP88683.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
anti-FecI sigma factor FecR
SCNpilot_expt_1000_bf_scaffold_3288_11
unknown

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comp(6234..8267)
DNA (2034bp) protein (678aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3288_12
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8405..9409
DNA (1005bp) protein (335aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8VMV0_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:EJU11935.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_3288_13
unknown

Not on your lists

9426..10244
DNA (819bp) protein (273aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3288_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10394..12055
DNA (1662bp) protein (554aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C17B rbh
Uncharacterized protein {ECO:0000313|EMBL:KFD27786.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3288_15
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12580..14940)
DNA (2361bp) protein (787aa)
Outer membrane receptor protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WDQ2_9SPHN rbh
Outer membrane receptor protein {ECO:0000313|EMBL:EJK80765.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
TonB-dependent receptor rbh
SCNpilot_expt_1000_bf_scaffold_3288_16
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15209..16171)
DNA (963bp) protein (321aa)
Transcriptional regulator, LacI family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAC1_NOVAD
Transcriptional regulator, LacI family {ECO:0000313|EMBL:KGB54495.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
LacI family transcription regulator; K02529 LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3288_17
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16867..17292)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A769
Uncharacterized protein {ECO:0000313|EMBL:EJU14978.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
Displaying 17 items

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