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SCNpilot_expt_1000_bf_scaffold_3407

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3407_1
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1502)
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=Cronobacter malonaticus 681 RepID=K8BI65_9ENTR
Uncharacterised protein {ECO:0000313|EMBL:CQY04476.1}; TaxID=90370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella typhi.;"
SCNpilot_expt_1000_bf_scaffold_3407_2
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2904..3908
DNA (1005bp) protein (335aa)
putative amidase; K01457 allophanate hydrolase [EC:3.5.1.54]
allophanate hydrolase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B37D1E
Allophanate hydrolase {ECO:0000313|EMBL:EQB05318.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
SCNpilot_expt_1000_bf_scaffold_3407_3
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3920..4852
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ID17_9SPHN rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCA90192.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_3407_4
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4897..5226)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K2Y4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJR26232.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3407_5
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5352..5744)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AP25_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL34976.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3407_6
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5756..7333)
DNA (1578bp) protein (526aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J281_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB30932.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
putative sulfotransferase rbh
SCNpilot_expt_1000_bf_scaffold_3407_7
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7330..8220)
DNA (891bp) protein (297aa)
Sterol desaturase-like n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ID21_9SPHN rbh
sterol desaturase-like protein rbh
Sterol desaturase-like {ECO:0000313|EMBL:CCA90196.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_3407_8
unknown

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comp(8225..8389)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3407_9
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8551..9501)
DNA (951bp) protein (317aa)
LysR family transcriptional regulator n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ID22_9SPHN rbh
LysR family transcriptional regulator rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:CCA90197.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_3407_10
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9806..10105
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9US43_9SPHN
Scaffold2, whole genome shotgun sequence {ECO:0000313|EMBL:KIS33698.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3407_11
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10202..11863)
DNA (1662bp) protein (554aa)
Sterol desaturase-like protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C1R0_9SPHN rbh
Sterol desaturase-like protein {ECO:0000313|EMBL:EIZ77717.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
sterol desaturase-like protein rbh
SCNpilot_expt_1000_bf_scaffold_3407_12
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12145..12645)
DNA (501bp) protein (167aa)
alpha-glucosidase (EC:3.2.1.20); K01187 alpha-glucosidase [EC:3.2.1.20]
Alpha-glucosidase {ECO:0000313|EMBL:CCA91914.1}; EC=3.2.1.20 {ECO:0000313|EMBL:CCA91914.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Alpha-glucosidase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IK96_9SPHN
SCNpilot_expt_1000_bf_scaffold_3407_13
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12779..13705)
DNA (927bp) protein (309aa)
alpha-glucosidase (EC:3.2.1.20); K01187 alpha-glucosidase [EC:3.2.1.20]
Alpha-glucosidase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EE80_9SPHN
Alpha-glucosidase {ECO:0000313|EMBL:EHJ60303.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_3407_14
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13909..16332
DNA (2424bp) protein (808aa)
glycogen/starch/alpha-glucan phosphorylase (EC:2.4.1.1); K00688 starch phosphorylase [EC:2.4.1.1] rbh
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Phosphorylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7S4_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_3407_15
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16350..18497
DNA (2148bp) protein (716aa)
glycogen branching enzyme (EC:2.4.1.18); K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] rbh
1,4-alpha-glucan branching enzyme GlgB {ECO:0000255|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000255|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000255|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000255|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000255|HAMAP-Rule:MF_00685}; Short=BE {ECO:0000255|HAMAP-Rule:MF_00685};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphing
glycogen branching protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00031AFC19 rbh
SCNpilot_expt_1000_bf_scaffold_3407_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18494..19696
DNA (1203bp) protein (401aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|SAAS:SAAS00055636}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|SAAS:SAAS00055636};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27); K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
glucose-1-phosphate adenylyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B725EA
SCNpilot_expt_1000_bf_scaffold_3407_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19722..21179
DNA (1458bp) protein (486aa)
glycogen/starch synthases, ADP-glucose type (EC:2.4.1.21); K00703 starch synthase [EC:2.4.1.21] rbh
Glycogen synthase {ECO:0000255|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000255|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000255|HAMAP-Rule:MF_00484}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Glycogen synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=GLGA_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_3407_18
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21176..21499
DNA (324bp) protein (108aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
isoamylase (EC:3.2.1.68); K02438 glycogen operon protein GlgX [EC:3.2.1.-]
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I324_9SPHN
SCNpilot_expt_1000_bf_scaffold_3407_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21496..22329
DNA (834bp) protein (278aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
isoamylase (EC:3.2.1.68); K02438 glycogen operon protein GlgX [EC:3.2.1.-]
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002E89E11
SCNpilot_expt_1000_bf_scaffold_3407_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22326..22931
DNA (606bp) protein (202aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glgX; glycogen debranching protein; K02438 glycogen operon protein GlgX [EC:3.2.1.-]
Glycogen debranching enzyme n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN90_9SPHN
SCNpilot_expt_1000_bf_scaffold_3407_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22946..23428)
DNA (483bp) protein (161aa)
General stress protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6P3_NOVAD
general stress protein
General stress protein {ECO:0000313|EMBL:ABD26480.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_3407_22
unknown

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comp(23455..23568)
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 22 items

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