ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3420

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3420_1
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1185
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BBA1 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU73687.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3420_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1014..1814)
DNA (801bp) protein (267aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM48_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65303.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3420_3
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2300..2596)
DNA (297bp) protein (99aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Novosphingobium RepID=F6II42_9SPHN
cyclophilin type peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_1000_bf_scaffold_3420_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2918..4348
DNA (1431bp) protein (477aa)
Magnesium transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM50_9SPHN rbh
mgtE; magnesium transporter; K06213 magnesium transporter rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3420_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4803..5837)
DNA (1035bp) protein (345aa)
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] rbh
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMH4_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_3420_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6084..6785)
DNA (702bp) protein (234aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMG4_9SPHN rbh
peptidyl-prolyl cis-trans isomerase rbh
SCNpilot_expt_1000_bf_scaffold_3420_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6856..7356)
DNA (501bp) protein (167aa)
coaD; phosphopantetheine adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Phosphopantetheine adenylyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMG3_9SPHN
SCNpilot_expt_1000_bf_scaffold_3420_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7367..8278)
DNA (912bp) protein (304aa)
ispA; geranyltranstransferase; K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] rbh
Geranyltranstransferase {ECO:0000313|EMBL:BAK67751.1}; EC=2.5.1.10 {ECO:0000313|EMBL:BAK67751.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Geranyltranstransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMG2_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_3420_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8275..8637)
DNA (363bp) protein (121aa)
xseB; exodeoxyribonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMG1_9SPHN
SCNpilot_expt_1000_bf_scaffold_3420_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8641..9027
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMG0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67749.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3420_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9133..10464)
DNA (1332bp) protein (444aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMF8_9SPHN rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67747.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3420_12
Microbacterium phage Min1, Caudovirales, Viruses

Not on your lists

comp(10549..12465)
DNA (1917bp) protein (639aa)
hypothetical protein id=24409437 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=Rothia mucilaginosa genus=Rothia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Putative uncharacterized protein {ECO:0000313|EMBL:ABR10497.1}; TaxID=446529 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Microbacterium phage Min1.;"
SCNpilot_expt_1000_bf_scaffold_3420_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12900..13199
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXF2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY83110.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
Displaying 13 items

View Taxonomy