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SCNpilot_expt_1000_bf_scaffold_3456

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3456_1
unknown

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554..649
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3456_2
uncultured Sphingomonadales bacterium HF0500_24B12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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991..2514
DNA (1524bp) protein (508aa)
Membrane protein involved in the export of o-antigen and teichoic acid n=1 Tax=uncultured Sphingomonadales bacterium HF0500_24B12 RepID=E0XYI6_9SPHN rbh
Membrane protein involved in the export of o-antigen and teichoic acid {ECO:0000313|EMBL:ADI19477.1}; TaxID=710993 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; environmental samples.;" source="uncultured Sphingomonadales bacterium HF0500_24B12.;"
capsular polysaccharide transporter rbh
SCNpilot_expt_1000_bf_scaffold_3456_3
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2519..4501
DNA (1983bp) protein (661aa)
Putative sulfatase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N729_ERYLH rbh
sulfatase rbh
Putative sulfatase {ECO:0000313|EMBL:ABC64512.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_expt_1000_bf_scaffold_3456_4
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4551..6371
DNA (1821bp) protein (607aa)
ABC transporter related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G506_NOVAD rbh
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial rbh
ABC transporter-like protein {ECO:0000313|EMBL:KHS47052.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_expt_1000_bf_scaffold_3456_5
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6374..7219
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B4A3C5
Uncharacterized protein {ECO:0000313|EMBL:EDL48941.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
hypothetical protein; K07029
SCNpilot_expt_1000_bf_scaffold_3456_6
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7216..7416)
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium RepID=F6IL34_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA92136.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_3456_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7458..7961)
DNA (504bp) protein (168aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2T8_9SPHN
ATP-dependent protease ATPase subunit HslU {ECO:0000256|SAAS:SAAS00089650}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ATP-dependent HslUV protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
SCNpilot_expt_1000_bf_scaffold_3456_8
unknown

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8003..8458
DNA (456bp) protein (152aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3456_9
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8751..9311)
DNA (561bp) protein (187aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] rbh
ATP-dependent protease subunit HslV n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G502_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_3456_10
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9373..9867)
DNA (495bp) protein (165aa)
SmpA/OmlA n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EEM9_9SPHN
SmpA/OmlA {ECO:0000313|EMBL:EHJ60274.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SmpA/OmlA protein
SCNpilot_expt_1000_bf_scaffold_3456_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10038..10553
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G500_NOVAD
Ubiquinol-cytochrome C chaperone {ECO:0000313|EMBL:GAO53842.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3456_12
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10550..11074
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4Z9_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS46888.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3456_13
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11296..12519)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CS83_SPHYA rbh
Putative acyl-CoA transferase/carnitine dehydratase {ECO:0000313|EMBL:KEZ19704.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
L-carnitine dehydratase/bile acid-inducible protein F rbh
SCNpilot_expt_1000_bf_scaffold_3456_14
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12539..12934)
DNA (396bp) protein (132aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q374_9SPHN
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EJL34582.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_3456_15
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13033..13857
DNA (825bp) protein (275aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Novosphingobium sp. AP12 RepID=J2HG21_9SPHN rbh
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJL34583.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3456_16
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13821..14366)
DNA (546bp) protein (182aa)
Single-stranded DNA-binding protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IL26_9SPHN rbh
single-strand DNA-binding protein; K03111 single-strand DNA-binding protein rbh
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_3456_17
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14619..14717)
DNA (99bp) protein (33aa)
iron transporter FeoB n=1 Tax=Sphingomonas wittichii RepID=UPI0003797A9A
ferrous iron transport protein B; K04759 ferrous iron transport protein B
Ferrous iron transport protein B {ECO:0000313|EMBL:ABQ68810.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Displaying 17 items

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