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SCNpilot_expt_1000_bf_scaffold_3474

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3474_1
unknown

Not on your lists

comp(2..76)
DNA (75bp) protein (25aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3474_2
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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210..626
DNA (417bp) protein (139aa)
Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TE38_RICCO
Uncharacterized protein {ECO:0000313|EMBL:AJC46822.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3474_3
Pseudoalteromonas rubra, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(725..3055)
DNA (2331bp) protein (777aa)
dipeptidyl-peptidase (EC:3.4.14.-) rbh
Peptidase S9, prolyl oligopeptidase active site region:peptidase S9B, dipeptidylpeptidase IV n=1 Tax=Pseudoalteromonas rubra ATCC 29570 RepID=U1KK07_9GAMM rbh
Peptidase S9, prolyl oligopeptidase active site region:peptidase S9B, dipeptidylpeptidase IV {ECO:0000313|EMBL:ERG47184.1}; TaxID=1117318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas rubra ATCC 29570.;"
SCNpilot_expt_1000_bf_scaffold_3474_4
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3241..4068)
DNA (828bp) protein (276aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8SHY2_9SPHN
Scaffold7, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31962.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_3474_5
unknown

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4680..4934
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3474_6
unknown

Not on your lists

5058..5414
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3474_7
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5844..7334)
DNA (1491bp) protein (497aa)
hypothetical protein; K09472 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase [EC:1.2.1.-] rbh
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWN8_PUSST rbh
Uncharacterized protein {ECO:0000313|EMBL:AEC18911.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_expt_1000_bf_scaffold_3474_8
Psychrobacter sp. JCM 18903, Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7331..8206)
DNA (876bp) protein (292aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1298610 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter sp. JCM 18903.;"
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Psychrobacter sp. G RepID=S4YU54_9GAMM rbh
SCNpilot_expt_1000_bf_scaffold_3474_9
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8251..9516)
DNA (1266bp) protein (422aa)
oxidoreductase n=1 Tax=Xanthomonas arboricola RepID=UPI0002D2796A rbh
Oxidoreductase {ECO:0000313|EMBL:KER84062.1}; TaxID=454957 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. celebensis.;"
oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_3474_10
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9509..9754)
DNA (246bp) protein (82aa)
sarcosine oxidase alpha subunit; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Uncharacterized protein n=3 Tax=Xanthomonas campestris pv. campestris RepID=B0RRL9_XANCB
Uncharacterized protein {ECO:0000313|EMBL:CEM57921.1}; TaxID=340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris.;"
SCNpilot_expt_1000_bf_scaffold_3474_11
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9751..10848)
DNA (1098bp) protein (366aa)
D-amino acid oxidase n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CI43_XANCA
D-amino acid oxidase
D-amino acid oxidase {ECO:0000313|EMBL:AEL07588.1}; TaxID=990315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. raphani 756C.;"
SCNpilot_expt_1000_bf_scaffold_3474_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10845..11792)
DNA (948bp) protein (316aa)
hypothetical protein; K01777 proline racemase [EC:5.1.1.4]
Proline racemase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYZ1_9GAMM
Proline racemase {ECO:0000313|EMBL:EIL92432.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_1000_bf_scaffold_3474_13
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11892..12596
DNA (705bp) protein (235aa)
Probable transcriptional regulator transcription regulator protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UEC5_XANAP
AraC family transcriptional regulator {ECO:0000313|EMBL:AHX14133.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
transcriptional regulator transcription regulator protein
SCNpilot_expt_1000_bf_scaffold_3474_14
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12701..12991)
DNA (291bp) protein (97aa)
Tol biopolymer transport system, periplasmic component-related protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0EJN4_CAUCE
Tol biopolymer transport system, periplasmic component-related protein {ECO:0000313|EMBL:ENZ81357.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
peptidase S41
Displaying 14 items

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